Version: 8.0.0
Date: Tue Jan 28 2025
lmo4b
Danio rerioZFIN:ZDB-GENE-030131-3570
SummaryOrthologyParalogyFunction - GO AnnotationsPathwaysPhenotypesDisease AssociationsAlleles and VariantsTransgenic AllelesModelsSequence Feature ViewerSequence DetailsExpressionMolecular InteractionsGenetic Interactions
Gene

lmo4b

Species
Danio rerio
Symbol
lmo4b
Name
LIM domain only 4b
Synonyms
  • fc45c09
  • lmo4l
Biotype
protein coding gene
Automated Description
Predicted to enable metal ion binding activity. Is expressed in several structures, including mesoderm; nervous system; optic vesicle; presumptive neural retina; and yolk syncytial layer. Orthologous to human LMO4 (LIM domain only 4).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR24208
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensLMO410 of 10YesYes☑ ☑☑☑☑☑☑☑☑ ☑
Mus musculusLmo410 of 10YesYes☑ ☑☑☑☑☑☑☑☑ ☑
Rattus norvegicusLmo49 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Xenopus tropicalislmo48 of 9YesYes☑ ☑☑☑☑☑☑☐☑  
Drosophila melanogasterCG57085 of 10YesYes☑ ☑☑☐☑☐☑☐☐ ☐
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
lmo4a116787755 of 8☑ ☑☐☑☐☑☑☐ 
si:dkey-90l8.3216985725 of 8☑ ☑☐☑☐☑☑☐ 
zgc:56628315879645 of 8☑ ☑☐☑☐☑☑☐ 
lmo1412869544 of 8☑ ☐☐☑☐☑☑☐ 
lmo3512669544 of 8☑ ☐☐☑☐☑☑☐ 
lmo2613256454 of 8☑ ☑☐☐☐☑☑☐ 
lhx2b715955442 of 8☑ ☐☐☐☐☐☑☐ 
lhx2a815853402 of 8☑ ☐☐☐☐☐☑☐ 
lhx4915057392 of 8☑ ☐☐☐☐☐☑☐ 
lhx91014556442 of 8☑ ☐☐☐☐☐☑☐ 
lhx51114956382 of 8☑ ☐☐☐☐☐☑☐ 
lmx1al1213556462 of 8☑ ☐☐☐☐☐☑☐ 
lhx1a1314755372 of 8☑ ☐☐☐☐☐☑☐ 
lhx6a1414554392 of 8☑ ☐☐☐☐☐☑☐ 
lmx1ba1513156452 of 8☑ ☐☐☐☐☐☑☐ 
lmx1a1614453382 of 8☑ ☐☐☐☐☐☑☐ 
lhx8a1711559432 of 8☑ ☐☐☐☐☐☑☐ 
lmx1bb1811855432 of 8☑ ☐☐☐☐☐☑☐ 
lhx1b1911957382 of 8☑ ☐☐☐☐☐☑☐ 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
Species
Gene
Association
Disease Qualifier
Disease
Evidence
Source
Based On
References
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    Alleles and Variants

    Genome location
    Assembly version
    GRCz11
    Viewer Help
    Data currently unavailable; sequence viewer under construction
    Allele/Variant Symbol
    Allele Synonyms
    Category
    Variant
    Variant type
    Molecular consequence
    Has Disease Annotations
    Has Phenotype Annotations
    la029201Tg
    • la029201
    		allele
    sa40693allele with one associated variant
    point mutation
    • stop gained
    sa8463allele with one associated variant
    point mutation
    • splice acceptor variant
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    View detailed Alleles/Variants information
    Download all Alleles/Variants for all genes of the species

    Transgenic Alleles

    No data available

    Models

    No data available

    Sequence Feature Viewer

    Genome location
    Assembly version
    GRCz11
    Viewer Help
    Data currently unavailable; sequence viewer under construction

    Sequence Details

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    Expression

    Primary Sources
    Other Sources
    Must provide at least one subject
    Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

    Molecular Interactions

    No data available

    Genetic Interactions

    No data available