Gene

hic1l

Species
Danio rerio
Symbol
hic1l
Name
hypermethylated in cancer 1 like
Synonyms
  • etID142640.25
  • hic1
Biotype
protein coding gene
Automated Description
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; regulation of cytokine production; and regulation of immune system process. Predicted to be located in nucleus. Predicted to be active in nucleoplasm.
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Saccharomyces cerevisiaeZAP12 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
hic2157455443 of 8  
hic1265546353 of 8  
zbtb18355240254 of 8  
zbtb42447146283 of 8  
zbtb1560636233 of 8  
zbtb20662935203 of 8  
mynn757239242 of 8  
zbtb16a867832212 of 8  
bcl6ab955837252 of 8  
zbtb2b1055536242 of 8  
patz11150038253 of 8  
zbtb341252538242 of 8  
zbtb241349041232 of 8  
zbtb7a1452935242 of 8  
zbtb141546241252 of 8  
zbtb251648438222 of 8  
zbtb261747338232 of 8  
zbtb2a1850934202 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
GRCz11
Viewer Help
25.565M25.566M25.567M25.568M25.569M25.570M25.571M25.572M25.573M25.574M25.575M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
la023248Tg
  • la023248
allele
la023249Tg
  • la023249
allele
sa32536allele with one associated variant
point mutation
  • stop gained
Showing 1 - 3 of 3 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
25.565M25.566M25.567M25.568M25.569M25.570M25.571M25.572M25.573M25.574M25.575M

Sequence Details

Loading...

Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available