Gene

rc3h1a

Species
Danio rerio
Symbol
rc3h1a
Name
ring finger and CCCH-type domains 1a
Synonyms
  • rc3h1
  • si:dkey-192m14.4
Biotype
protein coding gene
Automated Description
Predicted to enable RNA binding activity and ubiquitin protein ligase activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in P-body. Predicted to be active in cytoplasmic stress granule. Orthologous to human RC3H1 (ring finger and CCCH-type domains 1).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR13139
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensRC3H16 of 10YesNo  
Mus musculusRc3h16 of 10YesNo  
Xenopus tropicalisrc3h15 of 9YesNo   
Drosophila melanogasterroq7 of 10YesNo  
Caenorhabditis elegansrle-17 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
rc3h1b1114772658 of 8  
rc3h22117254447 of 8  
rnf18238546322 of 8  
zgc:16548147051362 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
GRCz11
Viewer Help
15.975M15.980M15.985M15.990M15.995M16.000M16.005M16.010M16.015M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
la028404Tg
  • la028404
allele
sa24123allele with one associated variant
point mutation
  • stop gained
sa16237allele with one associated variant
point mutation
  • stop gained
Showing 1 - 3 of 3 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
15.975M15.980M15.985M15.990M15.995M16.000M16.005M16.010M16.015M

Sequence Details

Transcript: Mode:

Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available