Gene

scn1ba

Species
Danio rerio
Symbol
scn1ba
Name
sodium channel, voltage-gated, type I, beta a
Synonyms
  • scn1b
  • si:ch211-265p12.1
Biotype
protein coding gene
Automated Description
Contributes to voltage-gated sodium channel activity. Acts upstream of or within sodium ion transport. Predicted to be located in plasma membrane. Predicted to be part of voltage-gated sodium channel complex. Is expressed in gill; heart; liver; musculature system; and nervous system. Human ortholog(s) of this gene implicated in Brugada syndrome 5; developmental and epileptic encephalopathy 52; familial atrial fibrillation; and generalized epilepsy with febrile seizures plus 1. Orthologous to human SCN1B (sodium voltage-gated channel beta subunit 1).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR10546
No data available
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
Phenotype Term
Annotation details
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    Disease Associations

    Cases where the expected disease association was NOT found
    Cell color indicative of annotation volume
    Gene
    Association
    Disease Qualifier
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      Alleles and Variants

      Allele/Variant Symbol
      Allele Synonyms
      Category
      Variant
      Variant type
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        Transgenic Alleles

        Species
        (carrying the transgene)
        Allele symbol
        Transgenic construct
        Expressed components
        Knock-down targets
        Regulatory regions
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          Models

          Model name
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            Sequence Feature Viewer

            Genome location
            Assembly version
            GRCz11
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            41.874M41.876M41.878M41.880M41.882M41.884M41.886M41.888M41.890M41.892M41.894M41.896M

            Sequence Details

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            Expression

            Primary Sources
            Other Sources
            Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

            Molecular Interactions

            scn1ba molecule type
            Interactor gene
            Interactor species
            Interactor molecule type
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              Genetic Interactions

              scn1ba role
              scn1ba genetic perturbation
              Interactor gene
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              Interactor role
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