Gene

si:dkey-24p1.1

Species
Danio rerio
Symbol
si:dkey-24p1.1
Name
si:dkey-24p1.1
Synonyms
None
Biotype
protein coding gene
Automated Description
Predicted to be located in membrane. Human ortholog(s) of this gene implicated in diffuse large B-cell lymphoma. Orthologous to human CD22 (CD22 molecule).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensCD227 of 10YesYes  
Mus musculusCd226 of 10YesYes  
Rattus norvegicusCd225 of 9YesYes   
Xenopus tropicaliscd225 of 9YesYes   
Drosophila melanogasterplum2 of 10YesYes  
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
nphs11127534202 of 8  
igsf9ba2114034212 of 8  
vcam1b393236232 of 8  
igsf9bb498234212 of 8  
cntn3a.15100531212 of 8  
ceacam1689136232 of 8  
ncam2775335222 of 8  
robo1865433222 of 8  
ncam1b951537242 of 8  
boc1052135212 of 8  
vcam1a1138241272 of 8  
cd221235043252 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
GRCz11
Viewer Help
38.105M38.110M38.115M38.120M38.125M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
sa39065allele with one associated variant
point mutation
  • splice acceptor variant
sa22709allele with one associated variant
point mutation
  • stop gained
Showing 1 - 2 of 2 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
38.105M38.110M38.115M38.120M38.125Msi:dkey-24p1.1-201 (si:dkey-24p1.1)

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available