Gene

vat1l

Species
Danio rerio
Symbol
vat1l
Name
vesicle amine transport 1-like
Synonyms
  • zgc:171879
Biotype
protein coding gene
Automated Description
Predicted to enable oxidoreductase activity. Orthologous to human VAT1L (vesicle amine transport 1 like).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR44054
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensVAT1L10 of 10YesYes  
Mus musculusVat1l10 of 10YesYes  
Rattus norvegicusVat1l9 of 9YesYes   
Xenopus tropicalisvat1l3 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
vat1117860465 of 8  
cryz215756383 of 8  
tp53i3314056344 of 8  
rtn4ip1417643273 of 8  
sord518944302 of 8  
mecr616445282 of 8  
adh5l721532192 of 8  
ptgr1.1817538242 of 8  
cryzl1913550282 of 8  
zgc:779381019331192 of 8  
adh8b1118131222 of 8  
adh8a1213144272 of 8  
ptgr21312739202 of 8  
adh5147253322 of 8  
ptgr1.2152264452 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
GRCz11
Viewer Help
65.31M65.32M65.33M65.34M65.35M65.36M65.37M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
sa30339allele with one associated variant
point mutation
  • splice donor variant
Showing 1 - 1 of 1 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
65.31M65.32M65.33M65.34M65.35M65.36M65.37Mvat1l-002 (vat1l)vat1l-201 (vat1l)

Sequence Details

Loading...

Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available