Version: 8.0.0Date: Tue Jan 28 2025
Gene
chst3a
- Species
- Danio rerio
- Symbol
- chst3a
- Name
- carbohydrate (chondroitin 6) sulfotransferase 3a
- Synonyms
- si:ch211-232k3.6
- Biotype
- protein coding gene
- Automated Description
- Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and chondroitin 6-sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and chondroitin sulfate biosynthetic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Is expressed in head; pectoral fin; pharyngeal arch cartilage; and somite. Human ortholog(s) of this gene implicated in osteochondrodysplasia and spondyloepiphyseal dysplasia with congenital joint dislocations. Orthologous to human CHST3 (carbohydrate sulfotransferase 3).
- ZFIN Description
- Not Available
- Cross References
- Additional Information
- Literature
Orthology
- Gene tree
- PANTHER:PTHR10704
Stringency:
Additional filters to further constrain the results:
| Species | Gene symbol | Count | Best | Best reverse | Method Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN |
|---|---|---|---|---|---|
| Homo sapiens | CHST3 | 10 of 10 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ ☑ |
| Mus musculus | Chst3 | 10 of 10 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ ☑ |
| Rattus norvegicus | Chst3 | 9 of 9 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ |
| Xenopus tropicalis | chst3 | 6 of 9 | Yes | Yes | ☐ ☑☑☑☑☑☑☐☐ |
| Drosophila melanogaster | CG31637 | 5 of 10 | Yes | No | ☑ ☐☑☐☑☐☑☐☑ ☐ |
| Drosophila melanogaster | CG9550 | 5 of 10 | Yes | No | ☑ ☐☑☐☑☐☑☐☑ ☐ |
Links to orthology data in JBrowse by filter level: Stringent, Moderate, No filter, Best and Best Reverse
Paralogy
| Gene symbol | Rank | Alignment Length (aa) | Similarity % | Identity % | Method Count | Method Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD |
|---|---|---|---|---|---|---|
| chst3b | 1 | 424 | 77 | 62 | 4 of 8 | ☑ ☐☐☑☑☐☑☐ |
| chst1 | 2 | 404 | 56 | 40 | 7 of 8 | ☑ ☑☐☑☑☑☑☑ |
| si:ch73-62b13.1 | 3 | 363 | 62 | 43 | 7 of 8 | ☑ ☑☐☑☑☑☑☑ |
| chst6 | 4 | 356 | 55 | 35 | 7 of 8 | ☑ ☑☐☑☑☑☑☑ |
| chst7 | 5 | 455 | 45 | 26 | 6 of 8 | ☑ ☑☐☐☑☑☑☑ |
| chst2b | 6 | 449 | 45 | 27 | 6 of 8 | ☑ ☑☐☐☑☑☑☑ |
| chst2a | 7 | 428 | 47 | 28 | 6 of 8 | ☑ ☑☐☐☑☑☑☑ |
Phenotypes
- Primary Sources
- Other Sources
- None
Phenotype Term | Annotation details | References |
|---|---|---|
| whole organism quality, normal |
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Disease Associations
Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
Species | Gene | Association | Disease Qualifier | Disease | Evidence | Source | Based On | References |
|---|---|---|---|---|---|---|---|---|
| No records match query. Try removing filters. | ||||||||
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Alleles and Variants
- Genome location
- Chr13:29519115...29520852 (1.74 kb)
- Assembly version
- GRCz11
- Viewer Help
Data currently unavailable; sequence viewer under construction
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Models
Model name | Experimental condition | Associated Human Diseases | Associated Phenotypes | Modifier | Source |
|---|---|---|---|---|---|
| chst3asa1677/sa1677 (TL) |
|
| ZFIN |
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Sequence Feature Viewer
- Genome location
- Chr13:29519115...29520852 (1.74 kb)
- Assembly version
- GRCz11
- Viewer Help
Data currently unavailable; sequence viewer under construction