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Date: Fri Dec 13 2024
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ccdc88aa
Danio rerio
ZFIN:ZDB-GENE-100701-2
Summary
Orthology
Paralogy
Function - GO Annotations
Pathways
Phenotypes
Disease Associations
Alleles and Variants
Transgenic Alleles
Models
Sequence Feature Viewer
Sequence Details
Expression
Molecular Interactions
Genetic Interactions
Gene
ccdc88aa
Species
Danio rerio
Symbol
ccdc88aa
Name
coiled-coil domain containing 88Aa
Synonyms
None
Biotype
protein coding gene
Automated Description
Predicted to act upstream of or within cytoskeleton-dependent intracellular transport. Predicted to be located in cytoplasm. Orthologous to human CCDC88A (coiled-coil domain containing 88A).
ZFIN Description
Not Available
Cross References
ENSEMBL:ENSDARG00000078440
NCBI_Gene:100329473
Show All 14
Additional Information
Literature
Orthology
Gene tree
PANTHER:PTHR18947
Links to orthology data in JBrowse by filter level:
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Best and Best Reverse
Paralogy
Gene symbol
Rank
Alignment Length (aa)
Similarity %
Identity %
Method Count
Method
Ensembl Compara
HGNC
InParanoid
OMA
OrthoFinder
OrthoInspector
PANTHER
PhylomeDB
SonicParanoid
SGD
ccdc88c
1
1888
52
34
7 of 8
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ccdc88b
2
1731
48
28
7 of 8
☑
☑
☐
☑
☑
☑
☑
☑
hook1
3
836
42
23
4 of 8
☑
☐
☐
☐
☑
☑
☑
☐
hook2
4
517
38
21
2 of 8
☑
☐
☐
☐
☐
☐
☑
☐
Function - GO Annotations
Show functions with at least one experimental evidence
Pathways
Reactome Pathway (0)
Reactome Reactions (0)
GO-CAMs (0)
No data available
No data available
No data available
Read more about the
GO-CAM Data Model
.
Phenotypes
Primary Sources
None
Other Sources
None
No data available
Disease Associations
Include negative annotations
Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
Alleles and Variants
Download all Alleles/Variants for all genes of the species
Transgenic Alleles
No data available
Models
No data available
Sequence Feature Viewer
Genome location
Chr6:6301205...6346557
(45.35 kb)
Assembly version
GRCz11
Viewer Help
6.305M
6.310M
6.315M
6.320M
6.325M
6.330M
6.335M
6.340M
6.345M
Sequence Details
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Expression
Primary Sources
None
Other Sources
Single Cell Expression Atlas
Expression Atlas
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.
Molecular Interactions
No data available
Genetic Interactions
No data available
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