Version: 8.0.0Date: Tue Jan 28 2025
Gene
lrrc59
- Species
- Danio rerio
- Symbol
- lrrc59
- Name
- leucine rich repeat containing 59
- Synonyms
- zgc:85752
- Biotype
- protein coding gene
- Automated Description
- Predicted to be involved in intracellular signal transduction. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Predicted to be active in cytoplasm. Is expressed in several structures, including axis; hatching gland; notochord; otic vesicle; and polster. Orthologous to human LRRC59 (leucine rich repeat containing 59).
- ZFIN Description
- Not Available
- Cross References
- Additional Information
- Literature
Orthology
- Gene tree
- PANTHER:PTHR44462
Stringency:
Additional filters to further constrain the results:
| Species | Gene symbol | Count | Best | Best reverse | Method Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN |
|---|---|---|---|---|---|
| Homo sapiens | LRRC59 | 9 of 10 | Yes | Yes | ☐ ☑☑☑☑☑☑☑☑ ☑ |
| Mus musculus | Lrrc59 | 8 of 10 | Yes | Yes | ☐ ☑☑☑☑☑☐☑☑ ☑ |
| Rattus norvegicus | Lrrc59 | 8 of 9 | Yes | Yes | ☐ ☑☑☑☑☑☑☑☑ |
| Xenopus tropicalis | lrrc59 | 7 of 9 | Yes | Yes | ☐ ☑☑☑☑☑☐☑☑ |
| Drosophila melanogaster | CG3408 | 4 of 10 | Yes | Yes | ☐ ☑☑☐☑☑☐☐☐ ☐ |
| Caenorhabditis elegans | F56A8.3 | 5 of 9 | Yes | Yes | ☑ ☑☑☐☐☑☐☑☐ |
Links to orthology data in JBrowse by filter level: Stringent, Moderate, No filter, Best and Best Reverse
Paralogy
| Gene symbol | Rank | Alignment Length (aa) | Similarity % | Identity % | Method Count | Method Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD |
|---|---|---|---|---|---|---|
| lrrc8ab | 1 | 177 | 49 | 28 | 2 of 8 | ☐ ☐☐☐☐☑☑☐ |
Disease Associations
Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
Species | Gene | Association | Disease Qualifier | Disease | Evidence | Source | Based On | References |
|---|---|---|---|---|---|---|---|---|
| No records match query. Try removing filters. | ||||||||
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Alleles and Variants
- Genome location
- Chr12:31783066...31787861 (4.80 kb)
- Assembly version
- GRCz11
- Viewer Help
Data currently unavailable; sequence viewer under construction
Sequence Feature Viewer
- Genome location
- Chr12:31783066...31787861 (4.80 kb)
- Assembly version
- GRCz11
- Viewer Help
Data currently unavailable; sequence viewer under construction
Expression
- Primary Sources
- Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.
Molecular Interactions
1 interactor gene based on 1 annotation
lrrc59 molecule type | Interactor gene | Interactor species | Interactor molecule type | Detection methods | Source | Reference |
|---|---|---|---|---|---|---|
protein | lmna | Danio rerio | protein |
| PMID:34332124 |
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