Gene

slc45a1

Species
Danio rerio
Symbol
slc45a1
Name
solute carrier family 45 member 1
Synonyms
  • zgc:158635
Biotype
protein coding gene
Automated Description
Predicted to enable sucrose:proton symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be active in membrane. Orthologous to human SLC45A1 (solute carrier family 45 member 1).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR19432
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensSLC45A110 of 10YesYes  
Mus musculusSlc45a110 of 10YesYes  
Rattus norvegicusSlc45a19 of 9YesYes   
Xenopus tropicalisslc45a14 of 9YesYes   
Drosophila melanogasterSlc45-15 of 10YesYes  
Drosophila melanogasterlovit5 of 10YesYes  
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
slc45a4b184347317 of 8  
slc45a2274245327 of 8  
slc45a3375833204 of 8  
zgc:77158476332194 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
all annotationsall disease by infectious agentbacterial infectious diseasefungal infectious diseaseparasitic infectious diseaseviral infectious diseaseall disease of anatomical entitycardiovascular system diseasecentral nervous system diseaseendocrine system diseasegastrointestinal system diseasehematopoietic system diseaseimmune system diseaseintegumentary system diseasemusculoskeletal system diseaseperipheral nervous system diseasereproductive system diseaserespiratory system diseasesensory system diseasethoracic diseaseurinary system diseaseall disease of cellular proliferationbenign neoplasmcancerpre-malignant neoplasmall genetic diseasechromosomal diseasemonogenic diseasepolygenic diseaseall other diseasedisease of mental healthdisease of metabolismphysical disordersyndrome
slc45a1 (Dre)
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
GRCz11
Viewer Help
40.650M40.652M40.654M40.656M40.658M40.660M40.662M40.664M40.666M40.668M40.670M40.672M40.674M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
sa41906allele with one associated variant
point mutation
  • stop gained
sa19012allele with one associated variant
point mutation
  • stop gained
sa9841allele with one associated variant
point mutation
  • stop gained
Showing 1 - 3 of 3 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
40.650M40.652M40.654M40.656M40.658M40.660M40.662M40.664M40.666M40.668M40.670M40.672M40.674Mslc45a1-201 (slc45a1)slc45a1-202 (slc45a1)slc45a1-203 (slc45a1)slc45a1-204 (slc45a1)

Sequence Details

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Expression

Primary Sources
None
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
slc45a1 (Dre)
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available