Gene

Snapin

Species
Drosophila melanogaster
Symbol
Snapin
Name
SNAP associated protein
Synonyms
  • CG32951
  • CG9958
Biotype
protein coding gene
Automated Description
Predicted to enable SNARE binding activity. Involved in autophagosome-lysosome fusion and homeostatic process. Located in synaptic vesicle. Orthologous to human SNAPIN (SNAP associated protein).
FB Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR31305
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensSNAPIN8 of 9YesYes   
Mus musculusSnapin7 of 9YesYes   
Rattus norvegicusSnapin7 of 9YesYes   
Danio reriosnapin7 of 10YesYes  
Caenorhabditis eleganssnpn-14 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
R6
Viewer Help
2.7586M2.7588M2.7590M2.7592M2.7594M2.7596M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
SnapinSK1
  • CG9958[SK1]
  • CG9958SK1
allele
SnapinSK5
  • CG9958[SK5]
  • CG9958SK5
allele
NT_033779.5:g.2758563A>Gvariant
SNP
  • 3 prime UTR variant
NT_033779.5:g.2758732A>Gvariant
SNP
  • 3 prime UTR variant
NT_033779.5:g.2759347C>Tvariant
SNP
  • missense variant
NT_033779.5:g.2759671G>Avariant
SNP
  • 5 prime UTR variant
NT_033779.5:g.2759015G>Avariant
SNP
  • 3 prime UTR variant
NT_033779.5:g.2759677A>Gvariant
SNP
  • 5 prime UTR variant
NT_033779.5:g.2758582G>Avariant
SNP
  • 3 prime UTR variant
NT_033779.5:g.2758877A>Gvariant
SNP
  • 3 prime UTR variant
Showing 1 - 10 of 55 rows
per page

Transgenic Alleles

Species
(carrying the transgene)
Allele symbol
Transgenic construct
Expressed components
Knock-down targets
Regulatory regions
Has Disease Annotations
Has Phenotype Annotations
Drosophila melanogasterHemK2GD12574
  • UASt
Drosophila melanogasterHemK2GD17714
  • UASt
Drosophila melanogasterHemK2HMS02003
  • UAS
Drosophila melanogasterSnapinGD12574
  • UASt
Drosophila melanogasterSnapinGD17714
  • UASt
Drosophila melanogasterSnapinHMS02003
  • UAS
Drosophila melanogasterSnapinJF02692
  • UAS
Drosophila melanogasterSnapinU6.NIG.sgRNA
Drosophila melanogasterSnapinUAS.Tag:FLAG
  • UAS
Drosophila melanogasterSnapinUAS.Venus
  • UASt
Showing 1 - 10 of 12 rows
per page

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R6
Viewer Help
2.7586M2.7588M2.7590M2.7592M2.7594M2.7596M

Sequence Details

Transcript: Mode:

Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

3 interactor genes based on 7 annotations
Snapin molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
Blos2Drosophila melanogaster
protein
  • experimental knowledge based
PMID:22036573
protein
Blos2Drosophila melanogaster
protein
  • two hybrid
PMID:20015953
protein
Blos2Drosophila melanogaster
protein
  • two hybrid
PMID:20015953
protein
BORCS5Drosophila melanogaster
protein
  • experimental knowledge based
PMID:22036573
protein
DysbDrosophila melanogaster
protein
  • two hybrid
PMID:20015953
protein
DysbDrosophila melanogaster
protein
  • anti tag coimmunoprecipitation
PMID:25568125
protein
DysbDrosophila melanogaster
protein
  • experimental knowledge based
PMID:22036573
Showing 1 - 7 of 7 rows
per page

Genetic Interactions

No data available