Gene

CG5280

Species
Drosophila melanogaster
Symbol
CG5280
Name
Not Available
Synonyms
None
Biotype
protein coding gene
Automated Description
Orthologous to human C22orf23 (chromosome 22 open reading frame 23).
FB Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR28348
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensC22orf239 of 9YesYes   
Mus musculus1700088E04Rik8 of 9YesYes   
Rattus norvegicusC7h22orf238 of 9YesYes   
Xenopus tropicalisc4h22orf237 of 9YesYes   
Danio reriosi:dkey-43k4.38 of 10YesYes  
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
all annotationsall disease by infectious agentbacterial infectious diseasefungal infectious diseaseparasitic infectious diseaseviral infectious diseaseall disease of anatomical entitycardiovascular system diseasecentral nervous system diseaseendocrine system diseasegastrointestinal system diseasehematopoietic system diseaseimmune system diseaseintegumentary system diseasemusculoskeletal system diseaseperipheral nervous system diseasereproductive system diseaserespiratory system diseasesensory system diseasethoracic diseaseurinary system diseaseall disease of cellular proliferationbenign neoplasmcancerpre-malignant neoplasmall genetic diseasechromosomal diseasemonogenic diseasepolygenic diseaseall other diseasedisease of mental healthdisease of metabolismphysical disordersyndrome
CG5280 (Dme)
C22orf23 (Hsa)
1700088E04Rik (Mmu)
C7h22orf23 (Rno)
c4h22orf23 (Xtr)
si:dkey-43k4.3 (Dre)
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
R6
Viewer Help
8.9892M8.9894M8.9896M8.9898M8.9900M8.9902M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
CG5280T317
  • CG5280[T317]
allele
NT_037436.4:g.8989167A>Tvariant
SNP
  • 3 prime UTR variant
NT_037436.4:g.8989621A>Gvariant
SNP
  • missense variant
NT_037436.4:g.8989887C>Avariant
SNP
  • intron variant
NT_037436.4:g.8990126C>Tvariant
SNP
  • 5 prime UTR variant
NT_037436.4:g.8989174A>Gvariant
SNP
  • 3 prime UTR variant
NT_037436.4:g.8989921G>Cvariant
SNP
  • splice region variant
NT_037436.4:g.8990180T>Gvariant
SNP
  • 5 prime UTR variant
NT_037436.4:g.8989399A>Cvariant
SNP
  • intron variant
NT_037436.4:g.8989492A>Cvariant
SNP
  • missense variant
Showing 1 - 10 of 31 rows
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Transgenic Alleles

Species
(carrying the transgene)
Allele symbol
Transgenic construct
Expressed components
Knock-down targets
Regulatory regions
Has Disease Annotations
Has Phenotype Annotations
Drosophila melanogasterCG5280GD11599
  • UASt
Drosophila melanogasterCG5280HMJ22110
  • UAS
Drosophila melanogasterCG5280KK109124
  • UASt
Drosophila melanogasterCG5280NIG.5280R
  • UASt
Drosophila melanogasterCG5280TKO.GS03845
Showing 1 - 5 of 5 rows
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Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R6
Viewer Help
8.9892M8.9894M8.9896M8.9898M8.9900M8.9902MCG5280-RA (CG5280)CG5068-RA (CG5068)CG5068-RB (CG5068)

Sequence Details

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Expression

Primary Sources
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
CG5280 (Dme)
1700088E04Rik (Mmu)
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

8 interactor genes based on 8 annotations
CG5280 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
CG7352Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG8301Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG10466Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG12496Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG13032Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG15646Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
Evi5Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
REPTOR-BPDrosophila melanogaster
protein
  • two hybrid
PMID:14605208
Showing 1 - 8 of 8 rows
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Genetic Interactions

No data available