Gene

Vwce

Species
Rattus norvegicus
Symbol
Vwce
Name
von Willebrand factor C and EGF domains
Synonyms
  • LOC102553236
  • LOC309209
Biotype
protein coding gene
Automated Description
Predicted to enable calcium ion binding activity. Predicted to be involved in cellular response to virus. Predicted to be located in extracellular region. Predicted to be active in cytoplasm. Orthologous to human VWCE (von Willebrand factor C and EGF domains).
RGD Description
Predicted to enable calcium ion binding activity. Predicted to be involved in cellular response to virus. Predicted to be active in cytoplasm. Orthologous to human VWCE (von Willebrand factor C and EGF domains); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR47333
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensVWCE7 of 10YesYes  
Mus musculusVwce5 of 9YesYes   
Xenopus tropicalisvwce6 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
207.285M207.290M207.295M207.300M207.305M207.310M207.315M207.320M207.325M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051336.1:g.207326299A>Gvariant
SNP
  • intron variant
NC_051336.1:g.207315734G>Avariant
SNP
  • intron variant
NC_051336.1:g.207316375C>Tvariant
NC_051336.1:g.207318139C>Tvariant
NC_051336.1:g.207320297A>Gvariant
SNP
  • intron variant
NC_051336.1:g.207320969A>Gvariant
NC_051336.1:g.207321960G>Cvariant
SNP
  • intron variant
NC_051336.1:g.207306284A>Gvariant
SNP
  • intron variant
NC_051336.1:g.207313743A>Gvariant
NC_051336.1:g.207320481C>Gvariant
SNP
  • intron variant
Showing 1 - 10 of 173 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
207.285M207.290M207.295M207.300M207.305M207.310M207.315M207.320M207.325MENSRNOT00000079679.2 (Vwce)NM_001271311.2 (Vwce)XM_039079806.2 (Vwce)XM_039079819.2 (Vwce)XM_039079827.2 (Vwce)XM_039079831.2 (Vwce)XM_039079840.2 (Vwce)XR_005486715.2 (Vwce)XR_005486717.2 (Vwce)ENSRNOT00000072343.3 (Pga5)Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.

Sequence Details

Transcript: Mode:

Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available