Version: 8.0.0
Date: Tue Jan 28 2025
Arid5b
Rattus norvegicusRGD:1311735
SummaryOrthologyParalogyFunction - GO AnnotationsPathwaysPhenotypesDisease AssociationsAlleles and VariantsTransgenic AllelesModelsSequence Feature ViewerSequence DetailsExpressionMolecular InteractionsGenetic Interactions
Gene

Arid5b

Species
Rattus norvegicus
Symbol
Arid5b
Name
AT-rich interaction domain 5B
Synonyms
  • AT rich interactive domain 5B (Mrf1 like)
  • AT-rich interactive domain-containing protein 5B
Biotype
protein coding gene
Automated Description
Predicted to enable transcription cis-regulatory region binding activity and transcription coactivator activity. Predicted to be involved in adipose tissue development and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including cellular response to leukemia inhibitory factor; face morphogenesis; and gonad development. Predicted to be active in nucleus. Orthologous to human ARID5B (AT-rich interaction domain 5B).
RGD Description
Predicted to enable transcription cis-regulatory region binding activity and transcription coactivator activity. Predicted to be involved in adipose tissue development and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including cellular response to leukemia inhibitory factor; face morphogenesis; and gonad development. Predicted to be located in nucleus. Orthologous to human ARID5B (AT-rich interaction domain 5B); INTERACTS WITH 17beta-estradiol; 2,2',5,5'-tetrachlorobiphenyl; bisphenol A.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR13964
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensARID5B1 of 10YesYes☐☑☐☐☐☐☐☐☐☐  
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
Species
Gene
Association
Disease Qualifier
Disease
Evidence
Source
Based On
References
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    Alleles and Variants

    Genome location
    Assembly version
    mRatBN7.2
    Viewer Help
    Data currently unavailable; sequence viewer under construction
    Allele/Variant Symbol
    Allele Synonyms
    Category
    Variant
    Variant type
    Molecular consequence
    Has Disease Annotations
    Has Phenotype Annotations
    NC_051355.1:g.20401037G>Avariant
    SNP
    • intron variant
    NC_051355.1:g.20439017C>Tvariant
    SNP
    • intron variant
    NC_051355.1:g.20440255T>Cvariant
    SNP
    • intron variant
    NC_051355.1:g.20357802G>Avariant
    SNP
    • intron variant
    NC_051355.1:g.20359683A>Tvariant
    SNP
    • intron variant
    NC_051355.1:g.20362918A>Gvariant
    SNP
    • intron variant
    NC_051355.1:g.20363897G>Avariant
    SNP
    • intron variant
    NC_051355.1:g.20307915T>Avariant
    SNP
    • intron variant
    NC_051355.1:g.20348963C>Tvariant
    SNP
    • intron variant
    NC_051355.1:g.20349012C>Tvariant
    SNP
    • intron variant
    Showing 1 - 10 of 606 rows
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    View detailed Alleles/Variants information
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    Transgenic Alleles

    No data available

    Models

    No data available

    Sequence Feature Viewer

    Genome location
    Assembly version
    mRatBN7.2
    Viewer Help
    Data currently unavailable; sequence viewer under construction

    Sequence Details

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    Expression

    Primary Sources
    None
    Other Sources
    Must provide at least one subject
    Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

    Molecular Interactions

    No data available

    Genetic Interactions

    No data available