Species | Gene symbol | Count | Best | Best reverse | Method Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN |
---|---|---|---|---|---|
Homo sapiens | CHMP6 | 7 of 9 | Yes | Yes | ☐ ☑☑☑☑☑☑☑☐ |
Mus musculus | Chmp6 | 7 of 9 | Yes | Yes | ☐ ☑☑☑☑☑☑☑☐ |
Rattus norvegicus | Chmp6 | 7 of 9 | Yes | Yes | ☐ ☑☑☑☑☑☑☑☐ |
Xenopus tropicalis | chmp6 | 7 of 9 | Yes | Yes | ☐ ☑☑☑☑☑☑☑☐ |
Danio rerio | chmp6a | 7 of 9 | Yes | Yes | ☐ ☑☑☑☑☑☑☑☐ |
Danio rerio | chmp6b | 7 of 9 | Yes | Yes | ☐ ☑☑☑☑☑☑☑☐ |
Drosophila melanogaster | Vps20 | 7 of 9 | Yes | Yes | ☐ ☑☑☑☑☑☑☑☐ |
Caenorhabditis elegans | vps-20 | 7 of 9 | Yes | Yes | ☐ ☑☑☑☑☑☑☑☐ |
Gene symbol | Rank | Alignment Length (aa) | Similarity % | Identity % | Method Count | Method Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD |
---|
Phenotype Term | Annotation details | References |
---|---|---|
abnormal chemical compound accumulation | ||
abnormal colony appearance | ||
abnormal protein/peptide distribution | ||
abnormal replicative lifespan | ||
abnormal subcellular morphology | ||
abnormal vacuolar morphology | ||
abnormal vacuolar transport | ||
absent invasive growth | ||
absent pseudohyphal growth | ||
absent respiratory growth |
Allele/Variant Symbol | Allele Synonyms | Category | Variant | Variant type | Molecular consequence | Has Disease Annotations | Has Phenotype Annotations |
---|---|---|---|---|---|---|---|
vps20-Δ |
| allele | Yes | ||||
vps20-∆loop∆MIM1 | allele | ||||||
vps20-∆loop | allele | ||||||
NC_001145.3:g.421708A>C | variant | SNP
| |||||
NC_001145.3:g.422003T>A | variant | SNP
| |||||
NC_001145.3:g.421266T>G | variant | SNP
| |||||
NC_001145.3:g.421272A>G | variant | SNP
| |||||
NC_001145.3:g.421314A>G | variant | SNP
| |||||
NC_001145.3:g.421766G>A | variant | SNP
| |||||
NC_001145.3:g.421309A>T | variant | SNP
|
VPS20 molecule type | Interactor gene | Interactor species | Interactor molecule type | Detection methods | Source | Reference |
---|---|---|---|---|---|---|
protein | ADY3 | Saccharomyces cerevisiae | protein |
| PMID:22875988 | |
protein | ASK1 | Saccharomyces cerevisiae | protein |
| PMID:10688190 | |
protein | BDF1 | Saccharomyces cerevisiae | protein |
| PMID:22875988 | |
protein | BRO1 | Saccharomyces cerevisiae | protein |
| PMID:34908216 | |
protein | BRO1 | Saccharomyces cerevisiae | protein |
| PMID:34908216 | |
protein | BUL2 | Saccharomyces cerevisiae | protein |
| PMID:22875988 | |
RNA | CCR4 | Saccharomyces cerevisiae | protein |
| PMID:29158339 | |
protein | CHM7 | Saccharomyces cerevisiae | protein |
| PMID:30942170 | |
protein | CIK1 | Saccharomyces cerevisiae | protein |
| PMID:22875988 | |
protein | COG3 | Saccharomyces cerevisiae | protein |
| PMID:22875988 |
VPS20 role | VPS20 genetic perturbation | Interactor gene | Interactor species | Interactor role | Interactor genetic perturbation | Interaction type | Phenotype or trait | Source | Reference |
---|---|---|---|---|---|---|---|---|---|
unspecified role | ACT1 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 | |||
unspecified role | ACT1 | Saccharomyces cerevisiae | unspecified role | synthetic haploinsufficiency (sensu BioGRID) |
| PMID:17167106 | |||
unspecified role | ARC40 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 | |||
unspecified role | ARD1 | Saccharomyces cerevisiae | unspecified role | synthetic growth defect (sensu BioGRID) |
| PMID:16487579 | |||
unspecified role | ARP4 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 | |||
unspecified role | ARP4 | Saccharomyces cerevisiae | unspecified role | synthetic lethality (sensu BioGRID) |
| PMID:18676811 | |||
unspecified role | AXL1 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 | |||
unspecified role | BCK1 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 | |||
unspecified role | BRE1 | Saccharomyces cerevisiae | unspecified role | synthetic growth defect (sensu BioGRID) |
| PMID:16487579 | |||
unspecified role | BRL1 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 |