Gene

pdgfa

Species
Xenopus tropicalis
Symbol
pdgfa
Name
platelet derived growth factor subunit A
Synonyms
  • pdgf
  • pdgf-a
Biotype
gene
Automated Description
Predicted to enable growth factor activity. Predicted to act upstream of or within positive regulation of cell division and positive regulation of cell population proliferation. Predicted to be located in extracellular region and membrane. Is expressed in ectoderm. Human ortholog(s) of this gene implicated in high grade glioma. Orthologous to human PDGFA (platelet derived growth factor subunit A).
XBXT Description
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensPDGFA5 of 9YesYes   
Mus musculusPdgfa5 of 9YesYes   
Rattus norvegicusPdgfa5 of 9YesYes   
Xenopus laevispdgfa.S1 of 1YesYes           
Xenopus laevispdgfa.L1 of 1YesYes           
Danio reriopdgfab5 of 9YesYes   
Danio reriopdgfaa4 of 9YesYes   
Drosophila melanogasterPvf14 of 9YesYes   
Caenorhabditis eleganspvf-14 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
pdgfb118961414 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
XT9.1
Viewer Help
22.000M22.005M22.010M22.015M22.020M22.025M22.030M22.035MNM_001170497.1 (pdgfa)XM_012969931.2 (pdgfa)XM_012969932.2 (pdgfa)XM_012969933.2 (pdgfa)XM_012969934.2 (pdgfa)

Sequence Details

Transcript: Mode:

Expression

Primary Sources
Other Sources
None
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available