Gene

trio

Species
Xenopus tropicalis
Symbol
trio
Name
trio Rho guanine nucleotide exchange factor
Synonyms
  • arhgef23
  • tgat
Biotype
gene
Automated Description
Predicted to enable ATP binding activity; guanyl-nucleotide exchange factor activity; and protein serine/threonine kinase activity. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder and autosomal dominant intellectual developmental disorder 44. Orthologous to human TRIO (trio Rho guanine nucleotide exchange factor).
XBXT Description
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensTRIO8 of 9YesYes   
Mus musculusTrio8 of 9YesYes   
Rattus norvegicusTrio7 of 9YesYes   
Xenopus laevistrio.L1 of 1YesYes           
Danio reriotrioa8 of 9YesYes   
Danio reriotriob4 of 9NoYes   
Drosophila melanogastertrio7 of 9YesYes   
Caenorhabditis elegansunc-737 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
kalrn1229867554 of 8  
mcf2l2184132192 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
XT9.1
Viewer Help
40.25M40.30M40.35M40.40M40.45M40.50MNM_001129921.1 (trio)XM_012964353.2 (trio)XM_012964354.2 (trio)XM_012964355.2 (trio)XM_012964356.2 (trio)XM_018094560.1 (trio)XR_001170947.2 (trio)XR_001170948.2 (trio)XT-9_1-rna27708 (Xetrov90016003m.g)

Sequence Details

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Expression

Primary Sources
Other Sources
None
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available