Gene

vti1b

Species
Xenopus tropicalis
Symbol
vti1b
Name
vesicle transport through interaction with t-SNAREs 1B
Synonyms
  • vesicle transport through interaction with t-SNAREs 1B
  • vti1b
Biotype
gene
Automated Description
Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including Golgi vesicle transport; regulation of protein localization to plasma membrane; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including cytoplasm; endomembrane system; and intracellular membrane-bounded organelle. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Orthologous to human VTI1B (vesicle transport through interaction with t-SNAREs 1B).
XBXT Description
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensVTI1B5 of 9YesYes   
Mus musculusVti1b5 of 9YesYes   
Rattus norvegicusVti1b5 of 9YesYes   
Xenopus laevisvti1b.L1 of 1YesYes           
Xenopus laevisvti1b.S1 of 1YesYes           
Danio reriovti1b5 of 9YesYes   
Saccharomyces cerevisiaeVTI13 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
dynll112264233 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
XT9.1
Viewer Help
48.992M48.993M48.994M48.995M48.996M48.997M48.998M48.999M49.000M49.001M

Sequence Details

Loading...

Expression

Primary Sources
Other Sources
None
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available