Gene

sgms1

Species
Xenopus tropicalis
Symbol
sgms1
Name
sphingomyelin synthase 1
Synonyms
  • sgms1
  • sphingomyelin synthase 1
Biotype
gene
Automated Description
Predicted to enable ceramide cholinephosphotransferase activity and sphingomyelin synthase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin biosynthetic process. Predicted to act upstream of or within apoptotic process and sphingolipid metabolic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be active in Golgi membrane; endoplasmic reticulum membrane; and plasma membrane. Orthologous to human SGMS1 (sphingomyelin synthase 1).
XBXT Description
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensSGMS15 of 9YesYes   
Mus musculusSgms15 of 9YesYes   
Rattus norvegicusSgms15 of 9YesYes   
Xenopus laevissgms1.L1 of 1YesYes           
Xenopus laevissgms1.S1 of 1YesYes           
Danio reriosgms1b5 of 9YesYes   
Danio reriosgms1a5 of 9NoYes   
Caenorhabditis eleganssms-13 of 9YesNo   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
sgms2134070564 of 8  
samd8240956383 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
XT9.1
Viewer Help
4.87M4.88M4.89M4.90M4.91M4.92M4.93M4.94M4.95M4.96MNM_001008196.1 (sgms1)XM_012966487.2 (sgms1)XM_012966488.2 (sgms1)XT-9_1-rna33469 (Xetrov90017457m.g)

Sequence Details

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Expression

Primary Sources
Other Sources
None
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available