Gene

rprd1b

Species
Danio rerio
Symbol
rprd1b
Name
regulation of nuclear pre-mRNA domain containing 1B
Synonyms
  • fb23h08
  • un-named hi3400
Biotype
protein coding gene
Automated Description
Predicted to enable RNA polymerase II C-terminal domain binding activity. Orthologous to human RPRD1B (regulation of nuclear pre-mRNA domain containing 1B).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR12460
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensRPRD1B10 of 10YesYes  
Mus musculusRprd1b10 of 10YesYes  
Rattus norvegicusRprd1b9 of 9YesYes   
Xenopus tropicalisrprd1b8 of 9YesYes   
Drosophila melanogasterCG90188 of 10YesYes  
Caenorhabditis eleganscids-17 of 9YesYes   
Saccharomyces cerevisiaeRTT1036 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
rprd2a133646265 of 8  
rprd2b229645274 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
Other Sources
None
Phenotype Term
Annotation details
References
anatomical system quality, abnormal
eye decreased size, abnormal
eye decreased width, abnormal
gut hypoplastic, abnormal
gut quality, abnormal
head decreased width, abnormal
liver hypoplastic, abnormal
liver quality, abnormal
swim bladder inflation disrupted, abnormal
Showing 1 - 9 of 9 rows
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Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

No mapped variant information available
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
hi3400Tg
  • hi3400
allele
Yes
Showing 1 - 1 of 1 rows
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Transgenic Alleles

No data available

Models

Model name
Experimental condition
Associated Human Diseases
Associated Phenotypes
Modifier
Source
rprd1bhi3400Tg/hi3400Tg
has condition:
standard conditions
  • eye decreased width, abnormal
  • gut hypoplastic, abnormal
ZFIN
rprd1bhi3400Tg
has condition:
standard conditions
  • anatomical system quality, abnormal
  • eye decreased size, abnormal
ZFIN
rprd1bhi3400Tg/+ (AB)ZFIN
rprd1bhi3400Tg/+ (AB/TU)ZFIN
Showing 1 - 4 of 4 rows
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Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
43.410M43.415M43.420M43.425M43.430M43.435M43.440M43.445M43.450Mrprd1b-201 (rprd1b)rprd1b-202 (rprd1b)rprd1b-203 (rprd1b)tti1-201 (tti1)

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available