Version: 8.0.0Date: Tue Jan 28 2025
Gene
clip2
- Species
- Danio rerio
- Symbol
- clip2
- Name
- CAP-GLY domain containing linker protein 2
- Synonyms
- None
- Biotype
- protein coding gene
- Automated Description
- Predicted to enable microtubule plus-end binding activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be active in cell cortex; microtubule plus-end; and nucleus. Orthologous to human CLIP2 (CAP-Gly domain containing linker protein 2).
- ZFIN Description
- Not Available
- Cross References
- Additional Information
- Literature
Orthology
- Gene tree
- PANTHER:PTHR18916
Stringency:
Additional filters to further constrain the results:
| Species | Gene symbol | Count | Best | Best reverse | Method Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN |
|---|---|---|---|---|---|
| Homo sapiens | CLIP2 | 10 of 10 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ ☑ |
| Mus musculus | Clip2 | 10 of 10 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ ☑ |
| Rattus norvegicus | Clip2 | 9 of 9 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ |
| Drosophila melanogaster | CLIP-190 | 6 of 10 | Yes | No | ☐ ☑☑☐☑☑☑☐☑ ☐ |
Links to orthology data in JBrowse by filter level: Stringent, Moderate, No filter, Best and Best Reverse
Paralogy
| Gene symbol | Rank | Alignment Length (aa) | Similarity % | Identity % | Method Count | Method Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD |
|---|---|---|---|---|---|---|
| clip1a | 1 | 1144 | 57 | 41 | 6 of 8 | ☑ ☑☐☑☑☐☑☑ |
| clip1b | 2 | 922 | 59 | 42 | 3 of 8 | ☐ ☐☐☑☑☐☑☐ |
| dctn1b | 3 | 1017 | 38 | 22 | 2 of 8 | ☑ ☐☐☐☐☐☑☐ |
| dctn1a | 4 | 982 | 39 | 22 | 2 of 8 | ☑ ☐☐☐☐☐☑☐ |
| clip3 | 5 | 351 | 45 | 32 | 2 of 8 | ☑ ☐☐☐☐☐☑☐ |
| zgc:103755 | 6 | 345 | 44 | 31 | 2 of 8 | ☑ ☐☐☐☐☐☑☐ |
Disease Associations
Cases where the expected disease association was NOT found
| all annotations | all disease by infectious agent | bacterial infectious disease | fungal infectious disease | parasitic infectious disease | viral infectious disease | all disease of anatomical entity | cardiovascular system disease | central nervous system disease | endocrine system disease | gastrointestinal system disease | hematopoietic system disease | immune system disease | integumentary system disease | musculoskeletal system disease | peripheral nervous system disease | reproductive system disease | respiratory system disease | sensory system disease | thoracic disease | urinary system disease | all disease of cellular proliferation | benign neoplasm | cancer | pre-malignant neoplasm | all genetic disease | chromosomal disease | monogenic disease | polygenic disease | all other disease | disease of mental health | disease of metabolism | physical disorder | syndrome | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| clip2 (Dre) |
Cell color indicative of annotation volume
No data available
Alleles and Variants
- Genome location
- Chr5:59397739...59480161 (82.42 kb)
- Assembly version
- GRCz11
- Viewer Help
Data currently unavailable; sequence viewer under construction
Allele/Variant Symbol | Allele Synonyms | Category | Variant | Variant type | Molecular consequence | Has Disease Annotations | Has Phenotype Annotations |
|---|---|---|---|---|---|---|---|
| sa20554 | allele with one associated variant | point mutation
| |||||
| sa15415 | allele with one associated variant | point mutation
| |||||
| sa33735 | allele with one associated variant | point mutation
| |||||
| sa38514 | allele with one associated variant | point mutation
| |||||
| sa33734 | allele with one associated variant | point mutation
| |||||
| sa45229 | allele with one associated variant | point mutation
| |||||
Showing 1 - 6 of 6 rows
per page
Sequence Feature Viewer
- Genome location
- Chr5:59397739...59480161 (82.42 kb)
- Assembly version
- GRCz11
- Viewer Help
Data currently unavailable; sequence viewer under construction
Expression
- Primary Sources
- None
- Other Sources
| all annotations | all anatomical structures | alimentary part of gastrointestinal system | chemosensory system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | mechanosensory system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | vestibulo-auditory system | visual system | endoderm | ectoderm | mesoderm | mesenchyme | adipose tissue | appendage | entire extraembryonic component | imaginal precursor | pharyngeal arch | other | all stages | embryo stage | post embryonic, pre-adult | post-juvenile adult stage | all cellular components | extracellular region | plasma membrane | synapse | cell junction | cell projection | cytoplasmic vesicle | endosome | vacuole | golgi apparatus | endoplasmic reticulum | cytosol | mitochondrion | nucleus | chromosome | cytoskeleton | protein-containing complex | other locations | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| clip2 (Dre) |
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.