Gene

pecam1b

Species
Danio rerio
Symbol
pecam1b
Name
platelet and endothelial cell adhesion molecule 1b
Synonyms
  • si:dkey-237i9.8
Biotype
protein coding gene
Automated Description
Predicted to be located in plasma membrane. Human ortholog(s) of this gene implicated in coronary artery disease; coronary stenosis; myocardial infarction; neuroblastoma; and psoriatic arthritis. Orthologous to human PECAM1 (platelet and endothelial cell adhesion molecule 1).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR11481
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensPECAM110 of 10YesYes  
Mus musculusPecam19 of 10YesYes  
Rattus norvegicusPecam19 of 9YesYes   
Xenopus tropicalispecam18 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
pecam1a171153337 of 8  
si:dkey-23a13.11290932192 of 8  
si:cabz01036022.1373938232 of 8  
zgc:154125442839242 of 8  
si:dkey-23a13.2544433192 of 8  
si:ch211-165f21.7643134192 of 8  
si:ch211-163c2.2740933212 of 8  
si:ch211-286b5.6834634202 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
GRCz11
Viewer Help
18.145M18.150M18.155M18.160M18.165M18.170M18.175M18.180M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
sa20680allele with one associated variant
point mutation
  • stop gained
sa9482allele with one associated variant
point mutation
  • stop gained
sa38548allele with one associated variant
point mutation
  • stop gained
sa18840allele with one associated variant
point mutation
  • stop gained
sa26725allele with one associated variant
point mutation
  • splice acceptor variant
sa20681allele with one associated variant
point mutation
  • stop gained
Showing 1 - 6 of 6 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
18.145M18.150M18.155M18.160M18.165M18.170M18.175M18.180Msi:dkey-237i9.8-002 (pecam1b)si:dkey-237i9.8-201 (pecam1b)si:dkey-237i9.8-203 (pecam1b)

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available