Version: 7.5.0
Date: Fri Dec 13 2024
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sh317
ZFIN:ZDB-ALT-171130-1
Allele of
klf2a
Danio rerio
Summary
Transgenic Constructs
Genomic Variant Information
Variant Molecular Consequences
Phenotypes
Disease Associations
Allele/Variant
sh317
Species
Danio rerio
Symbol
sh317
Category
allele
Allele of gene
klf2a
Transgenic Constructs
None
Synonyms
None
Description
Not Available
Additional Information
Literature
Transgenic Constructs
No data available
Genomic Variant Information
NC_007133.7:g.15899291_15899304del
Symbol
NC_007133.7:g.15899291_15899304del
Category
Variant
Variant type
deletion
Overlaps
klf2a
Location
22:15899291-15899304
Nucleotide Change
CCAGCCTCATGGCA>a
Most Severe Consequence
frameshift variant
See all consequences
HGVS.g name
22:g.15899291_15899304del
NC_007133.7:g.15899291_15899304del
Show All 3
HGVS.c name
ENSEMBL:ENSDART00000062587.1:c.338_351del
HGVS.p name
:p.Thr113ArgfsTer6
Synonyms
Not Available
Notes
Not Available
Cross references
Not Available
References
PMID:26506092
PMID:34610316
Show All 3
All alleles with this variant
Download Variants Data
Genome location
Chr22:15898221...15900919
(2.70 kb)
Assembly version
GRCz11
Viewer Help
15.8985M
15.8990M
15.8995M
15.9000M
15.9005M
Variant Types and Consequences
Only variants associated to alleles are shown in the graphics above. See all variants in
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Variant Molecular Consequences
Predicted effect of NC_007133.7:g.15899291_15899304del
Variant
NC_007133.7:g.15899291_15899304del
Variant type:
deletion
Show all details
Sequence feature
Sequence feature type
Associated gene
Location
Molecular consequence
Codon and amino acid change
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Phenotypes
Phenotype
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Annotation details
Source
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References
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blood circulation process quality, normal
View
Name
Type
Experimental condition
Modifier
References
klf2a
sh317/sh317
affected_genomic_model
has condition:
standard conditions
PMID:26506092
PMID:26506092
ZFIN
PMID:26506092
embryo development process quality, normal
View
Name
Type
Experimental condition
Modifier
References
klf2a
sh317/sh317
affected_genomic_model
has condition:
standard conditions
PMID:26506092
PMID:26506092
ZFIN
PMID:26506092
heart contraction rate, normal
View
Name
Type
Experimental condition
Modifier
References
klf2a
sh317/sh317
affected_genomic_model
has condition:
standard conditions
PMID:26506092
PMID:26506092
ZFIN
PMID:26506092
whole organism morphology, normal
View
Name
Type
Experimental condition
Modifier
References
klf2a
sh317/sh317
affected_genomic_model
has condition:
standard conditions
PMID:26506092
PMID:26506092
ZFIN
PMID:26506092
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Disease Associations
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