Allele/Variant

sh317

Species
Danio rerio
Symbol
sh317
Category
allele
Allele of gene
klf2a
Transgenic Constructs
None
Synonyms
None
Description
Not Available
Additional Information
Literature

Transgenic Constructs

No data available

Genomic Variant Information

NC_007133.7:g.15899291_15899304del

Symbol
NC_007133.7:g.15899291_15899304del
Category
Variant
Variant type
deletion
Overlaps
klf2a
Location
22:15899291-15899304
Nucleotide Change
CCAGCCTCATGGCA>a
Most Severe Consequence
  • frameshift variant
See all consequences
HGVS.g name
  • 22:g.15899291_15899304del
  • NC_007133.7:g.15899291_15899304del
HGVS.c name
  • ENSEMBL:ENSDART00000062587.1:c.338_351del
HGVS.p name
  • :p.Thr113ArgfsTer6
Synonyms
Not Available
Notes
Not Available
Cross references
Not Available
References
All alleles with this variant

Genome location
Assembly version
GRCz11
Viewer Help
15.8985M15.8990M15.8995M15.9000M15.9005M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.

Variant Molecular Consequences

Predicted effect of NC_007133.7:g.15899291_15899304del

Variant
NC_007133.7:g.15899291_15899304del
Variant type:
deletion
Sequence feature
Sequence feature type
Associated gene
Location
Molecular consequence
Codon and amino acid change
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    Phenotypes

    Phenotype
    Annotation details
    Source
    References
    blood circulation process quality, normal
    ZFIN
    embryo development process quality, normal
    ZFIN
    heart contraction rate, normal
    ZFIN
    whole organism morphology, normal
    ZFIN
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    Disease Associations

    No data available