Allele/Variant

au59

Species
Danio rerio
Symbol
au59
Category
allele
Allele of gene
tet2
Transgenic Constructs
None
Synonyms
None
Description
Not Available
Additional Information
Literature

Transgenic Constructs

No data available

Genomic Variant Information

NC_007112.7:g.26375504_26375513del

Symbol
NC_007112.7:g.26375504_26375513del
Category
Variant
Variant type
deletion
Overlaps
tet2
Location
1:26375504-26375513
Nucleotide Change
ATAGATTTAA>g
Most Severe Consequence
  • frameshift variant
See all consequences
HGVS.g name
  • 1:g.26375504_26375513del
  • NC_007112.7:g.26375504_26375513del
HGVS.c name
  • ENSEMBL:ENSDART00000113020.1:c.1219_1228del
  • ENSEMBL:ENSDART00000176380.1:c.1219_1228del
HGVS.p name
  • :p.Ile407ThrfsTer38
Synonyms
Not Available
Notes
  • c.1,219_1, 229delATAGATTTAA, p.Ile407Thrfs*3 ; protein truncation before the catalytic domain
  • 10bp deletion predicted to cause a frameshift beginning at amino acid (aa) 407, inserting 37 incorrect amino acids and truncating the protein at aa 444 out of 1,716
Cross references
Not Available
References
All alleles with this variant

Genome location
Assembly version
GRCz11
Viewer Help
26.360M26.365M26.370M26.375M26.380M26.385M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.

Variant Molecular Consequences

Predicted effect of NC_007112.7:g.26375504_26375513del

Variant
NC_007112.7:g.26375504_26375513del
Variant type:
deletion
Sequence feature
Sequence feature type
Associated gene
Location
Molecular consequence
Codon and amino acid change
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    Phenotypes

    No data available

    Disease Associations

    No data available