Allele/Variant

ua5007

Species
Danio rerio
Symbol
ua5007
Category
allele
Allele of gene
appa
Transgenic Constructs
None
Synonyms
None
Description
Not Available
Additional Information
Literature

Transgenic Constructs

No data available

Genomic Variant Information

NC_007112.7:g.656649_656653del

Symbol
NC_007112.7:g.656649_656653del
Category
Variant
Variant type
deletion
Overlaps
appa
Location
1:656649-656653
Nucleotide Change
CGACG>t
Most Severe Consequence
  • frameshift variant
See all consequences
HGVS.g name
  • 1:g.656649_656653del
  • (GRCz11)1:656649_656653del
HGVS.c name
  • ENSEMBL:ENSDART00000166786.1:c.41_45del
  • ENSEMBL:ENSDART00000170483.1:c.41_45del
HGVS.p name
  • :p.Ala14AspfsTer52
Synonyms
Not Available
Notes
Not Available
Cross references
Not Available
References
All alleles with this variant

Genome location
Assembly version
GRCz11
Viewer Help
618k620k622k624k626k628k630k632kappaappa-202appa-204
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.

Variant Molecular Consequences

Predicted effect of NC_007112.7:g.656649_656653del

Variant
NC_007112.7:g.656649_656653del
Variant type:
deletion
Sequence feature
Sequence feature type
Associated gene
Location
Molecular consequence
Codon and amino acid change
appa-202
mRNAExon 1 / 19
  • frameshift variant
40gCGTCG45
[14]AS[15]
=>
g
frameshift
appa-204
mRNAExon 1 / 18
  • frameshift variant
40gCGTCG45
[14]AS[15]
=>
g
frameshift
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Phenotypes

Phenotype
Annotation details
Source
References
whole organism fertility, normal
ZFIN
whole organism morphology, normal
ZFIN
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Disease Associations

No data available