Gene

halo

Species
Drosophila melanogaster
Symbol
halo
Name
halo
Synonyms
  • CG7428
Biotype
protein coding gene
Automated Description
Enables kinesin binding activity. Involved in lipid droplet transport along microtubule and lipid transport. Located in cytoplasm; lipid droplet; and nucleus. Is expressed in several structures, including anlage in statu nascendi; antennal anlage; antennal primordium; central brain anlage; and head epidermis primordium.
FB Description
halo (halo) encodes a protein that acts as cofactor of the molecular motor kinesin-1 and controls travel distances of moving lipid droplets. It determines the intracellular distribution of lipid droplets.
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
No data available
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
CG1371318962372 of 8  
CG1371127970332 of 8  
CG1371638059412 of 8  
CG1371249852282 of 8  
SNCF57863352 of 8  
CG3426667956342 of 8  
CG1587677362322 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
R6
Viewer Help
1.5176M1.5177M1.5178M1.5179M1.5180M1.5181M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
halounspecified
  • halo[unspecified]
allele
haloGA
  • halo[GA]
allele
haloSK2
  • CG7428[SK2]
  • CG7428SK2
allele with one associated variant
deletion
  • frameshift variant
haloSK1
  • CG7428[SK1]
  • CG7428SK1
allele with one associated variant
delins
  • stop gained
NT_033779.5:g.1517568A>Tvariant
SNP
  • 3 prime UTR variant
NT_033779.5:g.1517758G>Tvariant
SNP
  • missense variant
NT_033779.5:g.1517867G>Tvariant
SNP
  • synonymous variant
NT_033779.5:g.1518053C>Tvariant
SNP
  • synonymous variant
NT_033779.5:g.1517691T>Cvariant
SNP
  • 3 prime UTR variant
NT_033779.5:g.1518104G>Avariant
SNP
  • 5 prime UTR variant
Showing 1 - 10 of 28 rows
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Transgenic Alleles

Species
(carrying the transgene)
Allele symbol
Transgenic construct
Expressed components
Knock-down targets
Regulatory regions
Has Disease Annotations
Has Phenotype Annotations
Drosophila melanogasterhalo3.2.Tag:HA
Drosophila melanogasterhaloGD12235
  • UASt
Drosophila melanogasterhaloHMJ23094
  • UAS
Drosophila melanogasterhaloKK106139
  • UASt
Drosophila melanogasterhaloU6.NIG.sgRNA
Drosophila melanogasterhalot3.2
Showing 1 - 6 of 6 rows
per page

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R6
Viewer Help
1.5176M1.5177M1.5178M1.5179M1.5180M1.5181Mhalo-RB (halo)

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

1 interactor gene based on 2 annotations
halo molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
KhcDrosophila melanogaster
protein
  • anti tag coimmunoprecipitation
PMID:26906417
protein
KhcDrosophila melanogaster
protein
  • anti bait coimmunoprecipitation
PMID:26906417
Showing 1 - 2 of 2 rows
per page

Genetic Interactions

No data available