Gene

Uch-L5R

Species
Drosophila melanogaster
Symbol
Uch-L5R
Name
Uch-L5-related
Synonyms
  • CG1950
  • dUCHL5R
Biotype
protein coding gene
Automated Description
Predicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in regulation of chromosome organization and ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle. Predicted to be active in cytoplasm. Orthologous to human UCHL5 (ubiquitin C-terminal hydrolase L5).
FB Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR10589
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensUCHL56 of 9YesNo   
Mus musculusUchl55 of 9YesNo   
Rattus norvegicusUchl58 of 9YesNo   
Xenopus tropicalisuchl57 of 9YesNo   
Xenopus tropicalisrab11b.27 of 9YesNo   
Danio reriouchl58 of 10YesNo  
Caenorhabditis elegansubh-49 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Uch-L5131980628 of 8  
caly237648313 of 8  
Uch323344283 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
R6
Viewer Help
12.0554M12.0556M12.0558M12.0560M12.0562M12.0564M12.0566M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_004354.4:g.12056180G>Cvariant
SNP
  • missense variant
NC_004354.4:g.12056295C>Tvariant
SNP
  • synonymous variant
NC_004354.4:g.12056464G>Avariant
SNP
  • missense variant
NC_004354.4:g.12055516T>Avariant
SNP
  • missense variant
NC_004354.4:g.12055850G>Avariant
SNP
  • missense variant
NC_004354.4:g.12056114G>Tvariant
SNP
  • missense variant
NC_004354.4:g.12056442C>Tvariant
SNP
  • synonymous variant
NC_004354.4:g.12055440G>Tvariant
SNP
  • 3 prime UTR variant
NC_004354.4:g.12056388C>Tvariant
SNP
  • synonymous variant
NC_004354.4:g.12056139T>Cvariant
SNP
  • synonymous variant
Showing 1 - 10 of 34 rows
per page

Transgenic Alleles

Species
(carrying the transgene)
Allele symbol
Transgenic construct
Expressed components
Knock-down targets
Regulatory regions
Has Disease Annotations
Has Phenotype Annotations
Drosophila melanogasterUch-L5RGD8546
  • UASt
Drosophila melanogasterUch-L5RNIG.1950R
  • UASt
Drosophila melanogasterUch-L5RVSH330593
  • UAS
Drosophila melanogasterUch-L5RVSH330755
  • UAS
Showing 1 - 4 of 4 rows
per page

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R6
Viewer Help
12.0554M12.0556M12.0558M12.0560M12.0562M12.0564M12.0566MUch-L5R-RA (Uch-L5R)Muc11A-RB (Muc11A)lncRNA:CR43961-RB (lncRNA:CR43961)CG34323-RA (CG34323)moon-RA (moon)CG15734-RC (CG15734)CG15734-RD (CG15734)lncRNA:CR32657-RA (lncRNA:CR32657)lncRNA:CR32658-RA (lncRNA:CR32658)lncRNA:CR32658-RB (lncRNA:CR32658)Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

1 interactor gene based on 1 annotation
Uch-L5R molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
smoDrosophila melanogaster
protein
  • anti tag coimmunoprecipitation
PMID:28992318
Showing 1 - 1 of 1 rows
per page

Genetic Interactions

No data available