Gene

CG13084

Species
Drosophila melanogaster
Symbol
CG13084
Name
Not Available
Synonyms
None
Biotype
protein coding gene
Automated Description
Located in egg chorion.
FB Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
No data available
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
CG4066129348283 of 8  
CG13083233746222 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
R6
Viewer Help
19.4850M19.4852M19.4854M19.4856M19.4858M19.4860M19.4862M19.4864M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
CG13084SK4
  • CG13084[SK4]
allele with one associated variant
delins
  • stop gained
CG13084SK7
  • CG13084[SK7]
allele with one associated variant
deletion
  • frameshift variant
NT_033779.5:g.19486122C>Avariant
SNP
  • missense variant
NT_033779.5:g.19486328C>Avariant
SNP
  • missense variant
NT_033779.5:g.19485078G>Avariant
SNP
  • missense variant
NT_033779.5:g.19485136T>Gvariant
SNP
  • missense variant
NT_033779.5:g.19485218C>Avariant
SNP
  • synonymous variant
NT_033779.5:g.19485646T>Gvariant
SNP
  • missense variant
NT_033779.5:g.19485998T>Avariant
SNP
  • missense variant
NT_033779.5:g.19486363G>Cvariant
SNP
  • missense variant
Showing 1 - 10 of 36 rows
per page

Transgenic Alleles

Species
(carrying the transgene)
Allele symbol
Transgenic construct
Expressed components
Knock-down targets
Regulatory regions
Has Disease Annotations
Has Phenotype Annotations
Drosophila melanogasterCG13084GD5409
  • UASt
Drosophila melanogasterCG13084HMJ23466
  • UAS
Drosophila melanogasterCG13084KK103278
  • UASt
Drosophila melanogasterCG13084NIG.13084R
  • UASt
Drosophila melanogasterCG13084U6.NIG.sgRNA
Showing 1 - 5 of 5 rows
per page

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R6
Viewer Help
19.4850M19.4852M19.4854M19.4856M19.4858M19.4860M19.4862M19.4864MCG13084-RA (CG13084)

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

20 interactor genes based on 20 annotations
CG13084 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
akirinDrosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
Bap60Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CCT3Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG5466Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG9083Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG10365Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG10948Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG12470Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG13458Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG32486Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
Showing 1 - 10 of 20 rows
per page

Genetic Interactions

No data available