Gene

SmydA-2

Species
Drosophila melanogaster
Symbol
SmydA-2
Name
SET and MYND domain containing, arthropod-specific, member 2
Synonyms
  • CG18136
Biotype
protein coding gene
Automated Description
Predicted to enable histone deacetylase binding activity. Predicted to be involved in negative regulation of gene expression. Predicted to be active in nucleus. Is expressed in adult head; larval muscle system; and larval somatic muscle cell.
FB Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR46455
Stringency:
Additional filters to further constrain the results:
No ortholog matching your filter. Please try a less stringent filter.
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
SmydA-5154647315 of 8  
SmydA-4249951305 of 8  
SmydA-1352646283 of 8  
SmydA-6451744274 of 8  
SmydA-3547647274 of 8  
SmydA-7653041253 of 8  
SmydA-9750844252 of 8  
SmydA-8842444272 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
all annotationsall disease by infectious agentbacterial infectious diseasefungal infectious diseaseparasitic infectious diseaseviral infectious diseaseall disease of anatomical entitycardiovascular system diseasecentral nervous system diseaseendocrine system diseasegastrointestinal system diseasehematopoietic system diseaseimmune system diseaseintegumentary system diseasemusculoskeletal system diseaseperipheral nervous system diseasereproductive system diseaserespiratory system diseasesensory system diseasethoracic diseaseurinary system diseaseall disease of cellular proliferationbenign neoplasmcancerpre-malignant neoplasmall genetic diseasechromosomal diseasemonogenic diseasepolygenic diseaseall other diseasedisease of mental healthdisease of metabolismphysical disordersyndrome
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
R6
Viewer Help
19.0010M19.0012M19.0014M19.0016M19.0018M19.0020M19.0022M19.0024M19.0026M19.0028M19.0030M19.0032M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
SmydA-2CR60202-TG4.0
  • SmydA-2[CR60202-TG4.0]
allele
NT_037436.4:g.19001093C>Tvariant
SNP
  • missense variant
NT_037436.4:g.19001383C>Tvariant
SNP
  • missense variant
NT_037436.4:g.19001502G>Tvariant
SNP
  • missense variant
NT_037436.4:g.19001588C>Tvariant
SNP
  • synonymous variant
NT_037436.4:g.19003209T>Gvariant
SNP
  • 5 prime UTR variant
NT_037436.4:g.19001033C>Tvariant
SNP
  • 3 prime UTR variant
NT_037436.4:g.19001321C>Tvariant
SNP
  • missense variant
NT_037436.4:g.19001336G>Tvariant
SNP
  • missense variant
NT_037436.4:g.19001463C>Tvariant
SNP
  • missense variant
Showing 1 - 10 of 79 rows
per page

Transgenic Alleles

Species
(carrying the transgene)
Allele symbol
Transgenic construct
Expressed components
Knock-down targets
Regulatory regions
Has Disease Annotations
Has Phenotype Annotations
Drosophila melanogasterSmydA-2GD5149
  • UASt
Drosophila melanogasterSmydA-2HMJ23394
  • UAS
Showing 1 - 2 of 2 rows
per page

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R6
Viewer Help
19.0010M19.0012M19.0014M19.0016M19.0018M19.0020M19.0022M19.0024M19.0026M19.0028M19.0030M19.0032MSmydA-2-RA (SmydA-2)

Sequence Details

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Expression

Primary Sources
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available