Gene

CG5623

Species
Drosophila melanogaster
Symbol
CG5623
Name
Not Available
Synonyms
  • BcDNA:AT10995
Biotype
protein coding gene
Automated Description
Not Available
FB Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR21644
No data available
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
CG11634125651334 of 8  
CG2336228346284 of 8  
CG15717324547264 of 8  
CG12516422350304 of 8  
CG12637522545274 of 8  
CG13539623642234 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
R6
Viewer Help
15.7664M15.7666M15.7668M15.7670M15.7672M15.7674M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
CG5623MI02128
  • CG5623[MI02128]
allele with one associated variant
insertion
  • 5 prime UTR variant
NT_033777.3:g.15766976C>Tvariant
SNP
  • synonymous variant
NT_033777.3:g.15767052C>Avariant
SNP
  • missense variant
NT_033777.3:g.15767141T>Cvariant
SNP
  • synonymous variant
NT_033777.3:g.15766954G>Avariant
SNP
  • synonymous variant
NT_033777.3:g.15766290A>Gvariant
SNP
  • 3 prime UTR variant
NT_033777.3:g.15766562G>Avariant
SNP
  • synonymous variant
NT_033777.3:g.15766687T>Avariant
SNP
  • missense variant
NT_033777.3:g.15766847G>Avariant
SNP
  • synonymous variant
NT_033777.3:g.15767287A>Cvariant
SNP
  • intron variant
Showing 1 - 10 of 38 rows
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Transgenic Alleles

Species
(carrying the transgene)
Allele symbol
Transgenic construct
Expressed components
Knock-down targets
Regulatory regions
Has Disease Annotations
Has Phenotype Annotations
Drosophila melanogasterCG5623GD14927
  • UASt
Drosophila melanogasterCG5623KK104955
  • UASt
Showing 1 - 2 of 2 rows
per page

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R6
Viewer Help
15.7664M15.7666M15.7668M15.7670M15.7672M15.7674MCG5623-RA (CG5623)

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

2 interactor genes based on 2 annotations
CG5623 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
RpLP1Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
TrlDrosophila melanogaster
protein
  • two hybrid
PMID:14605208
Showing 1 - 2 of 2 rows
per page

Genetic Interactions

No data available