Gene

CG42296

Species
Drosophila melanogaster
Symbol
CG42296
Name
Not Available
Synonyms
  • CG15378
Biotype
protein coding gene
Automated Description
Predicted to enable chitin binding activity. Predicted to be located in extracellular region.
FB Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR23301
Stringency:
Additional filters to further constrain the results:
No ortholog matching your filter. Please try a less stringent filter.
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
CG48351103431202 of 8  
CG72482105828192 of 8  
obst-F339232212 of 8  
CG7252431732212 of 8  
CG17147529635212 of 8  
CG17826629833212 of 8  
CG33985727333202 of 8  
CG33986822939242 of 8  
obst-A925036202 of 8  
CG101401025533222 of 8  
Gasp1126628212 of 8  
obst-E1224133212 of 8  
obst-G1325130202 of 8  
CG101541421833222 of 8  
CG107251520631202 of 8  
obst-J1610748272 of 8  
obst-H178838252 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
R6
Viewer Help
2.0330M2.0335M2.0340M2.0345M2.0350M2.0355M2.0360M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
CG42296SK1
  • CG42296[SK1]
allele with one associated variant
delins
  • frameshift variant
CG42296SK5
  • CG42296[SK5]
allele with one associated variant
delins
  • frameshift variant
NT_033779.5:g.2034215T>Avariant
SNP
  • synonymous variant
NT_033779.5:g.2035872T>Cvariant
SNP
  • intron variant
NT_033779.5:g.2033887C>Tvariant
SNP
  • missense variant
NT_033779.5:g.2034041C>Avariant
SNP
  • synonymous variant
NT_033779.5:g.2034191C>Tvariant
SNP
  • synonymous variant
NT_033779.5:g.2033082G>Cvariant
SNP
  • missense variant
NT_033779.5:g.2035912A>Gvariant
SNP
  • 5 prime UTR variant
NT_033779.5:g.2033151G>Tvariant
SNP
  • missense variant
Showing 1 - 10 of 64 rows
per page

Transgenic Alleles

Species
(carrying the transgene)
Allele symbol
Transgenic construct
Expressed components
Knock-down targets
Regulatory regions
Has Disease Annotations
Has Phenotype Annotations
Drosophila melanogasterCG42296GD12700
  • UASt
Drosophila melanogasterCG42296HMS02744
  • UAS
Drosophila melanogasterCG42296KK100260
  • UASt
Drosophila melanogasterCG42296U6.NIG.sgRNA
Showing 1 - 4 of 4 rows
per page

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R6
Viewer Help
2.0330M2.0335M2.0340M2.0345M2.0350M2.0355M2.0360MCG42296-RA (CG42296)

Sequence Details

Loading...

Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available