Gene

Snmp1

Species
Drosophila melanogaster
Symbol
Snmp1
Name
Sensory neuron membrane protein 1
Synonyms
  • CG7000
  • Sensory neuron membrane protein
Biotype
protein coding gene
Automated Description
Predicted to enable scavenger receptor activity. Involved in several processes, including cellular response to pheromone; detection of chemical stimulus involved in sensory perception of smell; and pupariation. Located in cilium; dendrite; and neuronal cell body. Is expressed in several structures, including embryonic/larval fat body; gland; gonad; olfactory receptor neurons; and organism subdivision.
FB Description
Sensory neuron membrane protein 1 (Snmp1) encodes a member of the CD36 family of lipoprotein receptors. It is expressed in a subset of olfactory neurons. It is required for a normal olfactory response to the male-specific pheromone 11-cis vaccenyl acetate.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR11923
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Rattus norvegicusCd36l23 of 9YesNo   
Rattus norvegicusCd36l13 of 9YesNo   
Rattus norvegicusCd363 of 9YesNo   
Danio reriocd363 of 10YesNo  
Caenorhabditis elegansscav-43 of 9YesNo   
Caenorhabditis elegansscav-53 of 9YesNo   
Caenorhabditis elegansscav-33 of 9YesNo   
Caenorhabditis elegansscav-23 of 9YesNo   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
santa-maria154344263 of 8  
bez254844253 of 8  
Snmp2352346263 of 8  
emp453344263 of 8  
ninaD553442273 of 8  
crq650044264 of 8  
CG7227753143243 of 8  
dsb852042243 of 8  
CG10345950541243 of 8  
pes1047245243 of 8  
CG400061150441233 of 8  
CG27361251239233 of 8  
CG317411346942243 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
Other Sources
Phenotype Term
Annotation details
References
abnormal neurophysiology
abnormal neurophysiology | adult stage
abnormal smell perception
adult olfactory receptor neuron Or67d
antennal intermediate sensillum ai2
fertile
viable
Showing 1 - 7 of 7 rows
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Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
R6
Viewer Help
21.1655M21.1660M21.1665M21.1670M21.1675M21.1680M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
Snmp1unspecified
  • Snmp1[unspecified]
allele
Snmp12
  • Snmp[2]
  • snmp[2]
allele
Yes
Snmp11
  • Snmp[1]
  • snmp[1]
allele
Yes
Snmp1Z0429
  • Snmp[Z0429]
  • SnmpZ0429
allele with one associated variant
deletion
  • intron variant
Yes
Snmp1MI11063
  • Snmp1[MI11063]
allele with one associated variant
insertion
  • intron variant
Snmp1MI11063-TG4.0p-X
  • Snmp1[MI11063-TG4.0p-X]
allele with one associated variant
insertion
  • intron variant
NT_033777.3:g.21167190A>Tvariant
SNP
  • intron variant
NT_033777.3:g.21167431G>Tvariant
SNP
  • intron variant
NT_033777.3:g.21165691G>Avariant
SNP
  • intron variant
NT_033777.3:g.21165850T>Avariant
SNP
  • intron variant
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Transgenic Alleles

Species
(carrying the transgene)
Allele symbol
Transgenic construct
Expressed components
Knock-down targets
Regulatory regions
Has Disease Annotations
Has Phenotype Annotations
Drosophila melanogasterSnmp1A401Y.UAS
  • UASt
Drosophila melanogasterSnmp1C187-198S.UAS
  • UASt
Drosophila melanogasterSnmp1C265S.UAS
  • UASt
Drosophila melanogasterSnmp1C294S.UAS
  • UASt
Drosophila melanogasterSnmp1C330-332-341-352S.UAS
  • UASt
Drosophila melanogasterSnmp1C332S.UAS
  • UASt
Drosophila melanogasterSnmp1D186R.E190-191R.UAS
  • UASt
Drosophila melanogasterSnmp1GD478
  • UASt
Drosophila melanogasterSnmp1HMJ22075
  • UAS
Drosophila melanogasterSnmp1K158-168-172-174A.UAS
  • UASt
Showing 1 - 10 of 46 rows
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Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R6
Viewer Help
21.1655M21.1660M21.1665M21.1670M21.1675M21.1680M

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

5 interactor genes based on 5 annotations
Snmp1 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
Or22aDrosophila melanogaster
protein
  • fluorescent resonance energy transfer
PMID:23196131
protein
pipDrosophila melanogaster
protein
  • two hybrid
PMID:14605208
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Genetic Interactions

Snmp1 role
Snmp1 genetic perturbation
Interactor gene
Interactor species
Interactor role
Interactor genetic perturbation
Interaction type
Phenotype or trait
Source
Reference
suppressed gene
ninaDDrosophila melanogaster
suppressor gene
genetic suppression
    PMID:27302750
    suppressed gene
    Or83cDrosophila melanogaster
    suppressor gene
    genetic suppression
      PMID:24623773
      suppressor gene
      SumoDrosophila melanogaster
      suppressed gene
      genetic suppression
        PMID:23637637
        Showing 1 - 3 of 3 rows
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