Gene

CG45049

Species
Drosophila melanogaster
Symbol
CG45049
Name
Not Available
Synonyms
  • CG17618
  • CG6982
Biotype
protein coding gene
Automated Description
Predicted to be involved in cell-cell adhesion. Predicted to be located in septate junction. Predicted to be active in cell-cell junction. Is expressed in adult head and organism. Human ortholog(s) of this gene implicated in erythrokeratodermia variabilis and mutilating palmoplantar keratoderma with periorificial keratotic plaques. Orthologous to several human genes including TMEM47 (transmembrane protein 47).
FB Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR14399
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensTMEM478 of 9YesYes   
Homo sapiensPERP5 of 9NoYes   
Mus musculusTmem478 of 9YesYes   
Mus musculusPerp4 of 9NoYes   
Rattus norvegicusTmem478 of 9YesYes   
Rattus norvegicusPerp5 of 9NoYes   
Xenopus tropicalistmem476 of 9YesYes   
Xenopus tropicalisperp4 of 9NoYes   
Danio reriotmem478 of 10YesYes  
Danio rerioperp8 of 10YesYes  
Caenorhabditis elegansvab-99 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
R6
Viewer Help
22.7270M22.7275M22.7280M22.7285M22.7290M22.7295M22.7300M22.7305M22.7310M22.7315M22.7320M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
CG45049c01507
  • CG17618[c01507]
  • CG17618c01507
allele
CG45049G19235
  • CG45049[G19235]
allele with one associated variant
insertion
  • intron variant
CG45049HP37001
  • CG17618[HP37001]
  • CG17618HP37001
allele with one associated variant
insertion
  • coding sequence variant
CG45049BG02691
  • CG17618[BG02691]
  • CG17618BG02691
allele with one associated variant
insertion
  • 5 prime UTR variant
NT_033777.3:g.22729804A>Tvariant
SNP
  • intron variant
NT_033777.3:g.22730050G>Cvariant
SNP
  • synonymous variant
NT_033777.3:g.22727447A>Tvariant
SNP
  • synonymous variant
NT_033777.3:g.22727544C>Avariant
SNP
  • intron variant
NT_033777.3:g.22728013A>Gvariant
SNP
  • intron variant
NT_033777.3:g.22728379C>Avariant
SNP
  • intron variant
Showing 1 - 10 of 159 rows
per page

Transgenic Alleles

Species
(carrying the transgene)
Allele symbol
Transgenic construct
Expressed components
Knock-down targets
Regulatory regions
Has Disease Annotations
Has Phenotype Annotations
Drosophila melanogasterCG45049GD3956
  • UASt
Drosophila melanogasterCG45049GD8606
  • UASt
Drosophila melanogasterCG45049HMJ22625
  • UAS
Drosophila melanogasterCG45049KK110412
  • UASt
Drosophila melanogasterCG45049KK112983
  • UASt
Drosophila melanogasterCG45049NIG.6982R
  • UASt
Showing 1 - 6 of 6 rows
per page

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R6
Viewer Help
22.7270M22.7275M22.7280M22.7285M22.7290M22.7295M22.7300M22.7305M22.7310M22.7315M22.7320MCG45049-RB (CG45049)CG45049-RC (CG45049)CG45049-RD (CG45049)CG45049-RE (CG45049)CG45049-RF (CG45049)Takl2-RB (Takl2)

Sequence Details

Transcript: Mode:
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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available