Gene

SNAP47

Species
Homo sapiens
Symbol
SNAP47
Name
synaptosome associated protein 47
Synonyms
  • C1orf142
  • DKFZp686M10160
Biotype
protein coding gene
Automated Description
Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to act upstream of or within long-term synaptic potentiation. Located in BLOC-1 complex.
RGD Description
Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to act upstream of or within long-term synaptic potentiation. Located in BLOC-1 complex. [provided by Alliance of Genome Resources, Nov 2024]
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR19305
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Mus musculusSnap479 of 10YesYes  
Rattus norvegicusSnap479 of 10YesYes  
Xenopus laevissnap47.L1 of 1YesYes           
Xenopus tropicalissnap474 of 9YesYes   
Danio reriosnap479 of 10YesYes  
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
SNAP29132735192 of 8  
SNAP25232628153 of 8  
SNAP2336352333 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
all annotationsall disease by infectious agentbacterial infectious diseasefungal infectious diseaseparasitic infectious diseaseviral infectious diseaseall disease of anatomical entitycardiovascular system diseasecentral nervous system diseaseendocrine system diseasegastrointestinal system diseasehematopoietic system diseaseimmune system diseaseintegumentary system diseasemusculoskeletal system diseaseperipheral nervous system diseasereproductive system diseaserespiratory system diseasesensory system diseasethoracic diseaseurinary system diseaseall disease of cellular proliferationbenign neoplasmcancerpre-malignant neoplasmall genetic diseasechromosomal diseasemonogenic diseasepolygenic diseaseall other diseasedisease of mental healthdisease of metabolismphysical disordersyndrome
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
GRCh38
Viewer Help
227.730M227.735M227.740M227.745M227.750M227.755M227.760M227.765M227.770M227.775M227.780M
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_000001.11:g.227748094G>Avariant
SNP
  • missense variant
NC_000001.11:g.227735069G>Avariant
SNP
  • 5 prime UTR variant
NC_000001.11:g.227759339G>Avariant
SNP
  • missense variant
NC_000001.11:g.227759437G>Avariant
SNP
  • missense variant
NC_000001.11:g.227734024G>Avariant
SNP
  • missense variant
NC_000001.11:g.227732463C>Tvariant
SNP
  • missense variant
NC_000001.11:g.227732435A>Tvariant
SNP
  • missense variant
NC_000001.11:g.227735155G>Avariant
SNP
  • 5 prime UTR variant
NC_000001.11:g.227747715G>Cvariant
SNP
  • 5 prime UTR variant
NC_000001.11:g.227747771G>Avariant
SNP
  • missense variant
Showing 1 - 10 of 75 rows
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Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCh38
Viewer Help
227.730M227.735M227.740M227.745M227.750M227.755M227.760M227.765M227.770M227.775M227.780MENST00000315781.10 (SNAP47)ENST00000366759.9 (SNAP47)ENST00000366760.5 (SNAP47)ENST00000418653.6 (SNAP47)ENST00000426344.6 (SNAP47)ENST00000470038.1 (SNAP47)ENST00000475930.1 (SNAP47)ENST00000478768.3 (SNAP47)ENST00000480265.1 (SNAP47)ENST00000480897.5 (SNAP47)Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.

Sequence Details

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Expression

Primary Sources
None
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
SNAP47 (Hsa)
Snap47 (Mmu)
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

172 interactor genes based on 206 annotations
SNAP47 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
AKAP1Homo sapiens
protein
  • proximity labelling technology
PMID:34079125
protein
APOC2Homo sapiens
protein
  • two hybrid
PMID:32296183
protein
APOC4Homo sapiens
protein
  • two hybrid
PMID:32296183
protein
APOOHomo sapiens
protein
  • proximity labelling technology
PMID:32877691
protein
AQP2Homo sapiens
protein
  • two hybrid
PMID:32296183
protein
ARF6Homo sapiens
protein
  • proximity labelling technology
PMID:34079125
protein
ARFGEF1Homo sapiens
protein
  • two hybrid
PMID:26359495
protein
ARL1Homo sapiens
protein
  • proximity labelling technology
PMID:35844135
protein
ARL10Homo sapiens
protein
  • proximity labelling technology
PMID:35844135
protein
ATG9AHomo sapiens
protein
  • proximity labelling technology
PMID:34369648
Showing 1 - 10 of 206 rows
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Genetic Interactions

No data available