Gene

Rpl23

Species
Mus musculus
Symbol
Rpl23
Name
ribosomal protein L23
Synonyms
  • 2810009A01Rik
  • RIKEN cDNA 2810009A01 gene
Biotype
protein coding gene
Automated Description
A structural constituent of ribosome. Predicted to be involved in several processes, including cellular response to actinomycin D; protein stabilization; and regulation of macromolecule metabolic process. Predicted to act upstream of with a positive effect on G1 to G0 transition and regulation of G1 to G0 transition. Predicted to act upstream of or within translation. Located in cytoplasm and nucleolus. Part of cytosolic large ribosomal subunit. Is active in synapse. Is expressed in several structures, including central nervous system; retina; and uterus. Orthologous to human RPL23 (ribosomal protein L23).
MGI Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR11761
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensRPL2310 of 10YesYes  
Rattus norvegicusRpl239 of 9YesYes   
Xenopus tropicalisrpl234 of 9YesYes   
Danio reriorpl239 of 10YesYes  
Drosophila melanogasterRpL238 of 9YesYes   
Caenorhabditis elegansrpl-238 of 9YesYes   
Saccharomyces cerevisiaeRPL23B9 of 9YesYes   
Saccharomyces cerevisiaeRPL23A9 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
GRCm39
Viewer Help
97.6685M97.6690M97.6695M97.6700M97.6705M97.6710M97.6715M97.6720M97.6725M97.6730M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_000077.7:g.97668403A>Cvariant
SNP
  • 3 prime UTR variant
NC_000077.7:g.97669795A>Cvariant
SNP
  • intron variant
NC_000077.7:g.97669937C>Gvariant
SNP
  • intron variant
NC_000077.7:g.97670587G>Avariant
SNP
  • intron variant
NC_000077.7:g.97671314A>Cvariant
SNP
  • intron variant
NC_000077.7:g.97671527G>Tvariant
SNP
  • intron variant
NC_000077.7:g.97672573A>Gvariant
SNP
  • non coding transcript exon variant
NC_000077.7:g.97672764G>Avariant
SNP
  • intron variant
NC_000077.7:g.97672875A>Gvariant
SNP
  • intron variant
NC_000077.7:g.97668761T>Cvariant
SNP
  • 3 prime UTR variant
Showing 1 - 10 of 171 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCm39
Viewer Help
97.6685M97.6690M97.6695M97.6700M97.6705M97.6710M97.6715M97.6720M97.6725M97.6730MENSMUST00000103146 (Rpl23)ENSMUST00000128801 (Rpl23)ENSMUST00000150955 (Rpl23)ENSMUST00000151118 (Rpl23)ENSMUST00000151965 (Rpl23)NM_022891.3 (Rpl23)ENSMUST00020181839 (Gm54825)ENSMUST00000082967 (Snora21)NR_028078.1 (Snora21)

Sequence Details

Loading...

Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

78 interactor genes based on 84 annotations
Rpl23 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
AKT1Homo sapiens
protein
  • two hybrid
PMID:20368287
protein
Atxn1Mus musculus
protein
  • proximity labelling technology
PMID:30457570
protein
Atxn1Mus musculus
protein
  • proximity labelling technology
PMID:30457570
protein
Atxn1Mus musculus
protein
  • proximity labelling technology
PMID:30457570
protein
Btf3Mus musculus
protein
  • biochemical
PMID:32325033
protein
CCNFHomo sapiens
protein
  • affinity chromatography technology
PMID:36114006
protein
CCNFHomo sapiens
protein
  • proximity labelling technology
PMID:36114006
protein
CfdMus musculus
protein
  • affinity chromatography technology
PMID:30550785
protein
Copb2Mus musculus
protein
  • biochemical
PMID:32325033
protein
EedMus musculus
protein
  • affinity chromatography technology
PMID:24457600
Showing 1 - 10 of 84 rows
per page

Genetic Interactions

No data available