Gene

Clec3a

Species
Mus musculus
Symbol
Clec3a
Name
C-type lectin domain family 3, member a
Synonyms
  • 1110019O10Rik
  • C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 1 (cartilage-derived)
Biotype
protein coding gene
Automated Description
Predicted to enable carbohydrate binding activity. Predicted to be involved in ossification. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in cartilage condensation; forelimb; nasal septum cartilage; skeleton; and tail. Orthologous to human CLEC3A (C-type lectin domain family 3 member A).
MGI Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR22799
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensCLEC3A10 of 10YesYes  
Rattus norvegicusClec3a9 of 9YesYes   
Xenopus tropicalisclec3a9 of 9YesYes   
Danio rerioclec3a9 of 10YesYes  
Drosophila melanogasterlectin-21Ca4 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Clec3b117664475 of 9 
Clec11a216648344 of 9 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
Other Sources
Phenotype Term
Annotation details
References
abnormal auditory brainstem response
absent vibrissae
decreased total body fat amount
hyperactivity
increased bone mineral density
increased lean body mass
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Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
GRCm39
Viewer Help
115.145M115.146M115.147M115.148M115.149M115.150M115.151M115.152M115.153M115.154M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
Clec3aem1(IMPC)Jallele
Yes
Clec3atm1Lexallele
NC_000074.7:g.115147895G>Avariant
SNP
  • intron variant
NC_000074.7:g.115149058G>Avariant
SNP
  • intron variant
NC_000074.7:g.115148309A>Cvariant
SNP
  • intron variant
NC_000074.7:g.115150834C>Tvariant
SNP
  • intron variant
NC_000074.7:g.115154148G>Tvariant
SNP
  • 3 prime UTR variant
NC_000074.7:g.115154222G>Avariant
SNP
  • 3 prime UTR variant
NC_000074.7:g.115145384G>Tvariant
SNP
  • intron variant
NC_000074.7:g.115146522C>Avariant
SNP
  • intron variant
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Transgenic Alleles

No data available

Models

Model name
Experimental condition
Associated Human Diseases
Associated Phenotypes
Modifier
Source
Clec3aem1(IMPC)J/Clec3aem1(IMPC)J [background:] C57BL/6NJ-Clec3aem1(IMPC)J/Mmjax
  • abnormal auditory brainstem response
  • absent vibrissae
MGI
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Sequence Feature Viewer

Genome location
Assembly version
GRCm39
Viewer Help
115.145M115.146M115.147M115.148M115.149M115.150M115.151M115.152MENSMUST00000009018 (Clec3a)NM_001007223.4 (Clec3a)

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available