Gene

Xlr5b

Species
Mus musculus
Symbol
Xlr5b
Name
X-linked lymphocyte-regulated 5B
Synonyms
  • OTTMUSG00000017646
  • predicted gene, OTTMUSG00000017646
Biotype
protein coding gene
Automated Description
Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. Is expressed in hindgut diverticulum.
MGI Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR19368
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Rattus norvegicusXlr5c9 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Xlr5a1236100998 of 9 
Xlr5c223699997 of 9 
Sycp3322952303 of 9 
Gm1140422850303 of 9 
Gm14692422850303 of 9 
Xlr3a521851243 of 9 
Xlr3c621850233 of 9 
Xlr3b621850233 of 9 
Xlr4a721645253 of 9 
Xlr4b721645253 of 9 
Xlr4c721645253 of 9 
Gm4297825336223 of 9 
Gm5935923338213 of 9 
Gm19931023337213 of 9 
Gm51681126534173 of 9 
1700013H16Rik1220844203 of 9 
Gm20121324333213 of 9 
Gm208901421237253 of 9 
Gm51691524333213 of 9 
Gm145251624532203 of 9 
Gm61211624532203 of 9 
Gm208241721237233 of 9 
Gm209111820439243 of 9 
Xlr1919444203 of 9 
Gm7732019244213 of 9 
Gm285762118944223 of 9 
1700040F15Rik2220439213 of 9 
Gm216272220439213 of 9 
Gm59342324431193 of 9 
Gm207362418342253 of 9 
Gm285532518342243 of 9 
Gm211172618341243 of 9 
3830403N18Rik2718246203 of 9 
Gm218652817843243 of 9 
Gm212582917544233 of 9 
Gm208432917544233 of 9 
Gm214883021237252 of 9 
Gm289983118944222 of 9 
Slx3217940203 of 9 
Sly3320439212 of 9 
Gm104883419735193 of 9 
Gm102303419735193 of 9 
Gm20303518039193 of 9 
Gm212093618342252 of 9 
Gm208883618342252 of 9 
Gm209373618342252 of 9 
Gm307373717843242 of 9 
Gm351343717843242 of 9 
Gm215183817544232 of 9 
Gm100963919735192 of 9 
Gm104873919735192 of 9 
Gm100583919735192 of 9 
Gm148193919735192 of 9 
Gm146323919735192 of 9 
Gm101473919735192 of 9 
Gm104863919735192 of 9 
Gm48363919735192 of 9 
Slxl1406546183 of 9 
Gm16430406546183 of 9 
Gm21996417552212 of 9 
Gm16405426546182 of 9 
Gm21739432 of 9 
Gm28919432 of 9 
Gm29276432 of 9 
Gm20838432 of 9 
Gm28870432 of 9 
Gm20817432 of 9 
Gm20792432 of 9 
Gm21760432 of 9 
Gm21294432 of 9 
Gm28961432 of 9 
Gm21256432 of 9 
Gm28102432 of 9 
Gm21858432 of 9 
Gm21094432 of 9 
Gm21497432 of 9 
Gm29554432 of 9 
Gm28510432 of 9 
Gm28891432 of 9 
Gm20820432 of 9 
Gm29582432 of 9 
Gm21861432 of 9 
Gm21173432 of 9 
Gm29866432 of 9 
Gm21095432 of 9 

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
No data available

Disease Associations

Cases where the expected disease association was NOT found
all annotationsall disease by infectious agentbacterial infectious diseasefungal infectious diseaseparasitic infectious diseaseviral infectious diseaseall disease of anatomical entitycardiovascular system diseasecentral nervous system diseaseendocrine system diseasegastrointestinal system diseasehematopoietic system diseaseimmune system diseaseintegumentary system diseasemusculoskeletal system diseaseperipheral nervous system diseasereproductive system diseaserespiratory system diseasesensory system diseasethoracic diseaseurinary system diseaseall disease of cellular proliferationbenign neoplasmcancerpre-malignant neoplasmall genetic diseasechromosomal diseasemonogenic diseasepolygenic diseaseall other diseasedisease of mental healthdisease of metabolismphysical disordersyndrome
Xlr5b (Mmu)
Xlr5c (Rno)
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
GRCm39
Viewer Help
72.193M72.194M72.195M72.196M72.197M72.198M72.199M72.200M72.201M72.202MXlr5bENSMUST00000097221ENSMUST00000114518ENSMUST00000135742NM_001111293.1XM_006528218.4XM_006528219.3XM_006528220.3XM_006528221.4XM_006528222.4Maximum features displayed. See full view for more.
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_000086.8:g.72201610G>Tvariant
SNP
  • missense variant
NC_000086.8:g.72201598G>Avariant
SNP
  • missense variant
NC_000086.8:g.72201326G>Cvariant
SNP
  • intron variant
NC_000086.8:g.72201357C>Tvariant
SNP
  • intron variant
NC_000086.8:g.72200839C>Tvariant
SNP
  • intron variant
NC_000086.8:g.72201380G>Tvariant
SNP
  • intron variant
NC_000086.8:g.72201319T>Avariant
SNP
  • intron variant
NC_000086.8:g.72201638T>Avariant
SNP
  • missense variant
NC_000086.8:g.72201534A>Gvariant
SNP
  • intron variant
Showing 1 - 9 of 9 rows
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Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCm39
Viewer Help
72.193M72.194M72.195M72.196M72.197M72.198M72.199M72.200M72.201M72.202MENSMUST00000097221 (Xlr5b)ENSMUST00000114518 (Xlr5b)ENSMUST00000135742 (Xlr5b)NM_001111293.1 (Xlr5b)XM_006528218.4 (Xlr5b)XM_006528219.3 (Xlr5b)XM_006528220.3 (Xlr5b)XM_006528221.4 (Xlr5b)XM_006528222.4 (Xlr5b)XM_006528223.4 (Xlr5b)Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.

Sequence Details

Transcript: Mode:

 

>XM_006528221.4-cds X:72,191,390-72,202,492(+)
ATGTCAAACAAGGAACAAAAGGCCATGAAGAAAAGTGGCAAGCACCAGAGGGTACATAAGACCCTCCCATCAGATGACTTCAAGAACTCAGATGAAGTTAACCCTGCTGACAAACCAGCAGTTGGTACCAGTGGGATGGGCAGCCATTCTTCAGGATCAGACATGCAAGAGGCCAGGGAGCCTGTTCAGAAGAAGATGCAGGATTTCAAAGGTGATGATGGTACAGGACTTCTTATGGAAAAGAGGAAACAGTTTGAAGAGGATGTAAATGCCTCTTTCAGAAGTCTGAATGAAAACCTCCAGAGCATTTTGAAAGCTCAGCAGAATTCAAGGCAGGAGCTTAAGTCTCTGTACTGTGAAAGATTTGGGTCGGTGTACCACAATTGGCTGGTTGAGATGGACAGAACAAGGGACCAAGAAGAATACTTCAGTTTTATAACCCAGCAGCAAATGAAGATTTTACAGACGGCTATAGAGGACCATGAAACCAAGCTCAAAAACGCTAAAGATATGTGTGACACatttttgaagAAAGCCAACGACTTGAGTAAACGTCAAAAAACCTTTATTGGTGGTCAGCAGACTATTGTGGAGAAGGAAATCTCCAAGGTGCAGAACAGAGTAATCATGGAAACCcaaGATCAAGACATAGCCATGGTTGAAACATACCTTCAGTCCCTGATCCATGAAAGCTCTGAAGAAACCATCTGA

 Legend:

  • Up/downstream
  • UTR
  • Coding
  • Intron
  • Genomic (i.e., unprocessed)
  • Amino acid

 IMPORTANT NOTE: Transcript and protein sequences here are derived from GFF coordinate mapping to the reference assembly. It is possible that this sequence differs from the transcript or amino acid sequence reported in NCBI RefSeq when the transcript or protein has its own NCBI RefSeq entry that differs from the genome assembly.

 Upper case bases for noncoding transcripts indicate mature transcript sequence (i.e., spliced exons when applicable) and for coding transcripts indicate mature transcript's coding region (i.e., CDS).

Expression

Primary Sources
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
Xlr5b (Mmu)
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

1 interactor gene based on 1 annotation
Xlr5b molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
Usp7Mus musculus
protein
  • affinity chromatography technology
PMID:37196079
Showing 1 - 1 of 1 rows
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Genetic Interactions

No data available