Gene

Atpaf2

Species
Rattus norvegicus
Symbol
Atpaf2
Name
ATP synthase mitochondrial F1 complex assembly factor 2
Synonyms
  • LOC303190
Biotype
protein coding gene
Automated Description
Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to be located in cytosol and nuclear speck. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 1. Orthologous to human ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2).
RGD Description
Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to be located in cytosol and nuclear speck. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 1. Orthologous to human ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aconitine.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR21013
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensATPAF210 of 10YesYes  
Mus musculusAtpaf29 of 9YesYes   
Xenopus tropicalisatpaf29 of 9YesYes   
Danio rerioatpaf29 of 9YesYes   
Drosophila melanogasterl(2)k145059 of 9YesYes   
Caenorhabditis elegansY116A8C.279 of 9YesYes   
Saccharomyces cerevisiaeATP126 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
45.198M45.200M45.202M45.204M45.206M45.208M45.210M45.212M45.214M45.216M45.218M45.220M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051345.1:g.45198566T>Cvariant
SNP
  • intron variant
NC_051345.1:g.45203723C>Tvariant
SNP
  • intron variant
NC_051345.1:g.45199944G>Tvariant
SNP
  • intron variant
NC_051345.1:g.45210875A>Gvariant
SNP
  • intron variant
NC_051345.1:g.45215362G>Avariant
SNP
  • intron variant
NC_051345.1:g.45210534C>Tvariant
SNP
  • intron variant
NC_051345.1:g.45205728A>Tvariant
SNP
  • 3 prime UTR variant
NC_051345.1:g.45206432A>Cvariant
SNP
  • intron variant
NC_051345.1:g.45217160T>Gvariant
SNP
  • intron variant
NC_051345.1:g.45210226C>Gvariant
SNP
  • intron variant
Showing 1 - 10 of 59 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
45.198M45.200M45.202M45.204M45.206M45.208M45.210M45.212M45.214M45.216M45.218M45.220MENSRNOT00000004948.6 (Atpaf2)ENSRNOT00000098577.1 (Atpaf2)ENSRNOT00000101889.1 (Atpaf2)ENSRNOT00000116769.1 (Atpaf2)NM_001107006.1 (Atpaf2)XM_039085956.2 (Atpaf2)XM_039085960.2 (Atpaf2)XM_039085961.2 (Atpaf2)XM_039085962.2 (Atpaf2)XR_005489811.2 (Atpaf2)Maximum features displayed. See full view for more.

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available