Version: 8.0.0Date: Tue Jan 28 2025
Gene
Ubap1
- Species
- Rattus norvegicus
- Symbol
- Ubap1
- Name
- ubiquitin-associated protein 1
- Synonyms
- LOC362502
- UBAP
- Biotype
- protein coding gene
- Automated Description
- Predicted to enable ubiquitin binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be located in cytosol; intracellular membrane-bounded organelle; and plasma membrane. Predicted to be part of ESCRT I complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 80. Orthologous to human UBAP1 (ubiquitin associated protein 1).
- RGD Description
- Predicted to enable ubiquitin binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be located in cytosol; intracellular membrane-bounded organelle; and plasma membrane. Predicted to be part of ESCRT I complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 80. Orthologous to human UBAP1 (ubiquitin associated protein 1); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
- Cross References
- Additional Information
- Literature
Orthology
- Gene tree
- PANTHER:PTHR15960
Stringency:
Additional filters to further constrain the results:
| Species | Gene symbol | Count | Best | Best reverse | Method Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN |
|---|---|---|---|---|---|
| Homo sapiens | UBAP1 | 9 of 10 | Yes | Yes | ☐☑☑☑☑☑☑☑☑☑ |
| Mus musculus | Ubap1 | 9 of 9 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ |
| Xenopus tropicalis | ubap1 | 8 of 9 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☐ |
| Danio rerio | ubap1 | 8 of 9 | Yes | Yes | ☑ ☑☑☑☑☑☑☐☑ |
| Drosophila melanogaster | CG10435 | 5 of 9 | Yes | Yes | ☑ ☐☑☐☑☐☑☑☐ |
Links to orthology data in JBrowse by filter level: Stringent, Moderate, No filter, Best and Best Reverse
Paralogy
| Gene symbol | Rank | Alignment Length (aa) | Similarity % | Identity % | Method Count | Method Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD |
|---|---|---|---|---|---|---|
| Ubap1l | 1 | 512 | 38 | 26 | 3 of 9 | ☑☐☑☐☐☐☑☐☐ |
Disease Associations
Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
Species | Gene | Association | Disease Qualifier | Disease | Evidence | Source | Based On | References |
|---|---|---|---|---|---|---|---|---|
| No records match query. Try removing filters. | ||||||||
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Alleles and Variants
- Genome location
- Chr5:56520722...56561153 + (40.43 kb)
- Assembly version
- mRatBN7.2
- Viewer Help
Data currently unavailable; sequence viewer under construction
Allele/Variant Symbol | Allele Synonyms | Category | Variant | Variant type | Molecular consequence | Has Disease Annotations | Has Phenotype Annotations |
|---|---|---|---|---|---|---|---|
| NC_051340.1:g.56531563C>T | variant | SNP
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| NC_051340.1:g.56532610T>C | variant | SNP
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| NC_051340.1:g.56529620C>A | variant | SNP
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| NC_051340.1:g.56530830G>A | variant | SNP
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| NC_051340.1:g.56532497A>C | variant | SNP
| |||||
| NC_051340.1:g.56542843A>G | variant | SNP
| |||||
| NC_051340.1:g.56544736G>A | variant | SNP
| |||||
| NC_051340.1:g.56545209A>G | variant | SNP
| |||||
| NC_051340.1:g.56547459C>G | variant | SNP
| |||||
| NC_051340.1:g.56556094A>T | variant | SNP
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Sequence Feature Viewer
- Genome location
- Chr5:56520722...56561153 + (40.43 kb)
- Assembly version
- mRatBN7.2
- Viewer Help
Data currently unavailable; sequence viewer under construction