Gene

Rpa3

Species
Rattus norvegicus
Symbol
Rpa3
Name
replication protein A3
Synonyms
  • LOC296883
  • replication protein A 14 kDa subunit
Biotype
protein coding gene
Automated Description
Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within regulation of cell population proliferation and regulation of mitotic cell cycle. Part of DNA replication factor A complex. Orthologous to human RPA3 (replication protein A3).
RGD Description
Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in DNA repair and DNA replication. Predicted to act upstream of or within regulation of cell population proliferation and regulation of mitotic cell cycle. Part of DNA replication factor A complex. Orthologous to human RPA3 (replication protein A3); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; DNA replication pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR15114
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensRPA38 of 10YesYes  
Mus musculusRpa39 of 9YesYes   
Xenopus tropicalisrpa35 of 9YesYes   
Danio reriorpa39 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Rpa3l1112198948 of 9 

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
36.3050M36.3055M36.3060M36.3065M36.3070M36.3075M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051339.1:g.36307205G>Avariant
SNP
  • intron variant
NC_051339.1:g.36307586T>Gvariant
SNP
  • missense variant
NC_051339.1:g.36306385T>Cvariant
SNP
  • intron variant
NC_051339.1:g.36306031A>Gvariant
SNP
  • intron variant
NC_051339.1:g.36304674C>Tvariant
SNP
  • 3 prime UTR variant
Showing 1 - 5 of 5 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
36.3050M36.3055M36.3060M36.3065M36.3070M36.3075MENSRNOT00000011123.6 (Rpa3)NM_001106584.1 (Rpa3)

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available