Gene

Slco5a1

Species
Rattus norvegicus
Symbol
Slco5a1
Name
solute carrier organic anion transporter family, member 5A1
Synonyms
  • LOC312907
  • solute carrier organic anion transporter family member 5A1
Biotype
protein coding gene
Automated Description
Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to be located in intracellular membrane-bounded organelle and plasma membrane. Predicted to be active in basolateral plasma membrane. Orthologous to human SLCO5A1 (solute carrier organic anion transporter family member 5A1).
RGD Description
Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to be located in intracellular membrane-bounded organelle and plasma membrane. Predicted to be active in basolateral plasma membrane. Orthologous to human SLCO5A1 (solute carrier organic anion transporter family member 5A1); INTERACTS WITH 17alpha-ethynylestradiol; 6-propyl-2-thiouracil; acetamide.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR11388
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensSLCO5A110 of 10YesYes  
Mus musculusSlco5a19 of 9YesYes   
Xenopus tropicalisslco5a17 of 9YesYes   
Danio rerioslco5a1a9 of 9YesYes   
Drosophila melanogasterOatp30B8 of 9YesYes   
Caenorhabditis elegansF21G4.12 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Slco4c1178649345 of 9 
Slco3a1275552335 of 9 
Slco4a1365954365 of 9 
Slco1b2468651335 of 9 
Slco2b1570750315 of 9 
Slco2a1667751315 of 9 
Slco1a5770748285 of 9 
Slco1a4870747305 of 9 
Slco1a8971247285 of 9 
Slco1a61071748304 of 9 
Slco1c11165850315 of 9 
Slco1a11265749315 of 9 
Slco6d11380041263 of 9 
Slco6b11475143273 of 9 
Slco6c11570442273 of 9 

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

No mapped variant information available
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051340.1:g.6232244G>Avariant
SNP
  • intron variant
NC_051340.1:g.6286531C>Gvariant
SNP
  • intron variant
NC_051340.1:g.6286767G>Tvariant
SNP
  • intron variant
NC_051340.1:g.6288039G>Tvariant
SNP
  • intron variant
NC_051340.1:g.6240263C>Tvariant
SNP
  • intron variant
NC_051340.1:g.6242338T>Avariant
SNP
  • intron variant
NC_051340.1:g.6242339A>Gvariant
SNP
  • intron variant
NC_051340.1:g.6301434C>Tvariant
SNP
  • intron variant
NC_051340.1:g.6248730A>Cvariant
SNP
  • intron variant
NC_051340.1:g.6249147G>Tvariant
SNP
  • intron variant
Showing 1 - 10 of 785 rows
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Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
6.24M6.26M6.28M6.30M6.32M6.34M

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available