Species

Rattus norvegicus

Symbol

Brix1

Name

biogenesis of ribosomes BRX1

Synonyms

brix domain containing 2
brix domain-containing protein 2

Biotype

protein coding gene

Automated Description

Predicted to enable RNA binding activity. Predicted to be involved in ribosomal large subunit assembly. Predicted to be located in chromosome. Predicted to be active in nucleolus. Orthologous to human BRIX1 (biogenesis of ribosomes BRX1).

RGD Description

Predicted to enable RNA binding activity. Predicted to be involved in ribosomal large subunit assembly. Predicted to be located in chromosome. Predicted to be active in nucleolus. Orthologous to human BRIX1 (biogenesis of ribosomes BRX1); INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; amitrole.

Cross References

Additional Information

Literature

Orthology

Gene tree: PANTHER:PTHR13634

Stringency:StringentModerateNo filter

Additional filters to further constrain the results:

Best Score OnlyBest Reverse Score Only

Count:Species:Methods:

Species	Gene symbol	Count	Best	Best reverse	Method Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiens	BRIX1	10 of 10	Yes	Yes	☑☑☑☑☑☑☑☑☑☑
Mus musculus	Brix1	9 of 9	Yes	Yes	☑ ☑☑☑☑☑☑☑☑
Xenopus tropicalis	brix1	5 of 9	Yes	Yes	☑ ☐☐☑☑☐☑☑☐
Danio rerio	bxdc2	9 of 9	Yes	Yes	☑ ☑☑☑☑☑☑☑☑
Drosophila melanogaster	CG11583	9 of 9	Yes	Yes	☑ ☑☑☑☑☑☑☑☑
Caenorhabditis elegans	K12H4.3	8 of 9	Yes	Yes	☑ ☑☑☐☑☑☑☑☑
Saccharomyces cerevisiae	BRX1	9 of 9	Yes	Yes	☑ ☑☑☑☑☑☑☑☑

Links to orthology data in JBrowse by filter level: Stringent, Moderate, No filter, Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources: None
Other Sources: None

No data available

Disease Associations

Must provide at least one subject

Cell color indicative of annotation volume

Species	Gene	Association	Disease Qualifier	Disease	Evidence	Source	Based On	References
No records match query. Try removing filters.

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Alleles and Variants

Genome location

Chr2:59450608...59461495 - (10.89 kb)

Assembly version

mRatBN7.2

Viewer Help

Data currently unavailable; sequence viewer under construction

Allele/Variant Symbol	Category	Variant
NC_051337.1:g.59451245G>A	variant	rs3319397504 SNP 3 prime UTR variant
NC_051337.1:g.59458347G>A	variant	rs3319372595 SNP intron variant
NC_051337.1:g.59451024A>G	variant	rs107426878 SNP 3 prime UTR variant
NC_051337.1:g.59459490A>C	variant	rs106832514 SNP intron variant
NC_051337.1:g.59456573A>C	variant	rs3319399791 SNP missense variant
NC_051337.1:g.59452015T>A	variant	rs8164270 SNP stop gained
NC_051337.1:g.59456836C>T	variant	rs3319403860 SNP intron variant
NC_051337.1:g.59452587G>A	variant	rs3319351411 SNP intron variant
NC_051337.1:g.59453488G>A	variant	rs3319397519 SNP intron variant
NC_051337.1:g.59452341G>T	variant	rs3319399676 SNP intron variant

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View detailed Alleles/Variants information

Download all Alleles/Variants for all genes of the species

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location

Chr2:59450608...59461495 - (10.89 kb)

Assembly version

mRatBN7.2

Viewer Help

Data currently unavailable; sequence viewer under construction

Sequence Details

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Expression

Primary Sources

None

Other Sources

Must provide at least one subject

Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available