Gene

Rmdn3

Species
Rattus norvegicus
Symbol
Rmdn3
Name
regulator of microtubule dynamics 3
Synonyms
  • Fam82a2
  • Fam82c
Biotype
protein coding gene
Automated Description
Predicted to enable microtubule binding activity. Predicted to be involved in intracellular calcium ion homeostasis. Is active in glutamatergic synapse; postsynapse; and presynapse. Orthologous to human RMDN3 (regulator of microtubule dynamics 3).
RGD Description
Predicted to enable microtubule binding activity. Predicted to be involved in intracellular calcium ion homeostasis. Is active in glutamatergic synapse; postsynapse; and presynapse. Orthologous to human RMDN3 (regulator of microtubule dynamics 3); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 1,3,5-trinitro-1,3,5-triazinane; 2,2',5,5'-tetrachlorobiphenyl.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR16056
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensRMDN310 of 10YesYes  
Mus musculusRmdn39 of 9YesYes   
Xenopus tropicalisrmdn35 of 9YesYes   
Danio reriormdn39 of 9YesYes   
Caenorhabditis elegansrmd-66 of 9YesYes   
Caenorhabditis elegansrmd-36 of 9YesYes   
Caenorhabditis elegansrmd-25 of 9NoYes   
Caenorhabditis elegansrmd-14 of 9NoYes   
Caenorhabditis eleganssup-353 of 9NoYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Rmdn2140454364 of 9 
Rmdn1223054373 of 9 
Tex10324335192 of 9 

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
106.126M106.128M106.130M106.132M106.134M106.136M106.138M106.140M106.142M106.144M106.146M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051338.1:g.106135203C>Tvariant
SNP
  • synonymous variant
NC_051338.1:g.106138655C>Avariant
SNP
  • intron variant
NC_051338.1:g.106144095G>Avariant
NC_051338.1:g.106129886G>Avariant
NC_051338.1:g.106145526C>Tvariant
SNP
  • intron variant
NC_051338.1:g.106143576T>Cvariant
SNP
  • synonymous variant
NC_051338.1:g.106133807G>Avariant
NC_051338.1:g.106136391C>Gvariant
NC_051338.1:g.106132320A>Tvariant
NC_051338.1:g.106134767A>Cvariant
SNP
  • intron variant
Showing 1 - 10 of 51 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
106.126M106.128M106.130M106.132M106.134M106.136M106.138M106.140M106.142M106.144M106.146MENSRNOT00000016356.7 (Rmdn3)ENSRNOT00000071591.3 (Rmdn3)NM_001014046.2 (Rmdn3)

Sequence Details

Transcript: Mode:

Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available