Gene

Pdcd7

Species
Rattus norvegicus
Symbol
Pdcd7
Name
programmed cell death 7
Synonyms
  • LOC363082
  • programmed cell death protein 7
Biotype
protein coding gene
Automated Description
Predicted to be involved in response to glucocorticoid. Predicted to act upstream of or within RNA splicing; positive regulation of T cell apoptotic process; and positive regulation of apoptotic signaling pathway. Predicted to be part of U12-type spliceosomal complex and U2AF complex. Orthologous to human PDCD7 (programmed cell death 7).
RGD Description
Predicted to be involved in response to glucocorticoid. Predicted to act upstream of or within RNA splicing; positive regulation of T cell apoptotic process; and positive regulation of apoptotic signaling pathway. Predicted to be part of U12-type spliceosomal complex and U2AF complex. Orthologous to human PDCD7 (programmed cell death 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR48190
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensPDCD78 of 10YesYes  
Mus musculusPdcd77 of 9YesYes   
Xenopus tropicalispdcd76 of 9YesYes   
Danio reriopdcd76 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
65.864M65.866M65.868M65.870M65.872M65.874M65.876M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051343.1:g.65868542A>Gvariant
SNP
  • intron variant
NC_051343.1:g.65862877T>Cvariant
SNP
  • missense variant
NC_051343.1:g.65868871C>Tvariant
SNP
  • intron variant
NC_051343.1:g.65873525C>Avariant
SNP
  • intron variant
NC_051343.1:g.65862927C>Tvariant
SNP
  • synonymous variant
NC_051343.1:g.65864468G>Tvariant
SNP
  • intron variant
NC_051343.1:g.65862926T>Cvariant
SNP
  • missense variant
NC_051343.1:g.65865942G>Avariant
SNP
  • intron variant
NC_051343.1:g.65868505T>Cvariant
SNP
  • intron variant
NC_051343.1:g.65872659C>Avariant
SNP
  • intron variant
Showing 1 - 10 of 31 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
65.864M65.866M65.868M65.870M65.872M65.874M65.876M

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available