Gene

Opa3

Species
Rattus norvegicus
Symbol
Opa3
Name
outer mitochondrial membrane lipid metabolism regulator OPA3
Synonyms
  • LOC308409
  • NEWGENE_1309147
Biotype
protein coding gene
Automated Description
Predicted to be involved in visual perception. Predicted to act upstream of or within several processes, including bone development; fat cell differentiation; and neuromuscular process. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria type 3 and optic atrophy 3. Orthologous to human OPA3 (outer mitochondrial membrane lipid metabolism regulator OPA3).
RGD Description
Predicted to be involved in visual perception. Predicted to act upstream of or within several processes, including bone development; fat cell differentiation; and neuromuscular process. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria type 3 and optic atrophy 3. Orthologous to human OPA3 (outer mitochondrial membrane lipid metabolism regulator OPA3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR12499
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensOPA31 of 10YesYes  
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
78.880M78.885M78.890M78.895M78.900M78.905M78.910M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051336.1:g.78911342A>Tvariant
SNP
  • intron variant
NC_051336.1:g.78881306T>Gvariant
SNP
  • 5 prime UTR variant
NC_051336.1:g.78898864T>Cvariant
SNP
  • 3 prime UTR variant
NC_051336.1:g.78908433G>Cvariant
SNP
  • missense variant
NC_051336.1:g.78881302A>Gvariant
SNP
  • 5 prime UTR variant
NC_051336.1:g.78887530C>Gvariant
SNP
  • intron variant
NC_051336.1:g.78896564A>Gvariant
SNP
  • intron variant
NC_051336.1:g.78886328T>Cvariant
SNP
  • intron variant
NC_051336.1:g.78895451G>Avariant
SNP
  • intron variant
NC_051336.1:g.78900710C>Tvariant
SNP
  • 3 prime UTR variant
Showing 1 - 10 of 51 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
78.880M78.885M78.890M78.895M78.900M78.905M78.910M

Sequence Details

Transcript: Mode:

Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available