Version: 8.0.0
Date: Tue Jan 28 2025
Matn4
Rattus norvegicusRGD:1309732
SummaryOrthologyParalogyFunction - GO AnnotationsPathwaysPhenotypesDisease AssociationsAlleles and VariantsTransgenic AllelesModelsSequence Feature ViewerSequence DetailsExpressionMolecular InteractionsGenetic Interactions
Gene

Matn4

Species
Rattus norvegicus
Symbol
Matn4
Name
matrilin 4
Synonyms
  • LOC296358
  • matrilin-4
Biotype
protein coding gene
Automated Description
Predicted to enable calcium ion binding activity. Predicted to act upstream of or within response to axon injury. Predicted to be located in extracellular region. Predicted to be part of matrilin complex. Predicted to be active in collagen-containing extracellular matrix. Orthologous to human MATN4 (matrilin 4).
RGD Description
Predicted to enable calcium ion binding activity. Predicted to act upstream of or within response to axon injury. Predicted to be part of matrilin complex. Predicted to be active in collagen-containing extracellular matrix. Orthologous to human MATN4 (matrilin 4); INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; alpha-Zearalanol.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR24020
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensMATN410 of 10YesYes☑☑☑☑☑☑☑☑☑☑  
Mus musculusMatn49 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Xenopus tropicalismatn45 of 9YesYes☑ ☐☐☑☑☐☑☑☐  
Danio reriomatn45 of 9YesYes☑ ☐☐☑☑☐☑☑☐  
Caenorhabditis elegansmua-32 of 9YesYes☐ ☐☐☐☐☑☐☑☐  
Caenorhabditis elegansmup-42 of 9YesYes☐ ☐☐☐☐☑☐☑☐  
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Matn2190547355 of 9☑☐☐☐☑☑☑☑☐ 
Matn1263153396 of 9☑☐☐☐☑☑☑☑☑ 
Col14a13114428173 of 9☑☐☐☐☐☐☑☑☐ 
Col6a5472740252 of 9☑☐☐☐☐☐☐☑☐ 
Matn3535965486 of 9☑☐☐☐☑☑☑☑☑ 
Col6a6663744252 of 9☑☐☐☐☐☐☐☑☐ 
Vwa2756043263 of 9☑☐☐☐☐☐☑☑☐ 
Vit857638242 of 9☑☐☐☐☐☐☐☑☐ 
Col20a1922750333 of 9☑☐☐☐☐☐☑☑☐ 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
Species
Gene
Association
Disease Qualifier
Disease
Evidence
Source
Based On
References
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    Alleles and Variants

    Genome location
    Assembly version
    mRatBN7.2
    Viewer Help
    Data currently unavailable; sequence viewer under construction
    Allele/Variant Symbol
    Allele Synonyms
    Category
    Variant
    Variant type
    Molecular consequence
    Has Disease Annotations
    Has Phenotype Annotations
    NC_051338.1:g.153121310C>Avariant
    SNP
    • intron variant
    NC_051338.1:g.153129502A>Cvariant
    SNP
    • intron variant
    NC_051338.1:g.153125221G>Tvariant
    SNP
    • intron variant
    NC_051338.1:g.153127114T>Cvariant
    SNP
    • synonymous variant
    NC_051338.1:g.153128708G>Tvariant
    SNP
    • intron variant
    NC_051338.1:g.153130363C>Tvariant
    SNP
    • intron variant
    NC_051338.1:g.153126220T>Cvariant
    SNP
    • intron variant
    NC_051338.1:g.153123882A>Gvariant
    SNP
    • intron variant
    NC_051338.1:g.153128469G>Avariant
    SNP
    • intron variant
    NC_051338.1:g.153129310A>Gvariant
    SNP
    • intron variant
    Showing 1 - 10 of 33 rows
    per page
    View detailed Alleles/Variants information
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    Transgenic Alleles

    No data available

    Models

    No data available

    Sequence Feature Viewer

    Genome location
    Assembly version
    mRatBN7.2
    Viewer Help
    Data currently unavailable; sequence viewer under construction

    Sequence Details

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    Expression

    Primary Sources
    None
    Other Sources
    Must provide at least one subject
    Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

    Molecular Interactions

    No data available

    Genetic Interactions

    No data available