Species

Rattus norvegicus

Symbol

Or1j13c

Name

olfactory receptor family 1 subfamily J member 13C

Synonyms

olfactory receptor 408
olfactory receptor gene Olr408

Biotype

protein coding gene

Automated Description

Predicted to enable olfactory receptor activity. Predicted to be involved in signal transduction. Predicted to be active in plasma membrane.

RGD Description

Predicted to enable olfactory receptor activity. Predicted to be involved in signal transduction. Predicted to be active in plasma membrane; INTERACTS WITH cadmium dichloride; vinclozolin.

Cross References

Additional Information

Literature

Orthology

Gene tree: PANTHER:PTHR48001

Stringency:StringentModerateNo filter

Additional filters to further constrain the results:

Best Score OnlyBest Reverse Score Only

Count:Species:Methods:

Species	Gene symbol	Count	Best	Best reverse	Method Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Mus musculus	Or1j18	2 of 9	Yes	Yes	☑ ☐☐☑☐☐☐☐☐
Danio rerio	or42a6	3 of 9	Yes	No	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42b2	3 of 9	Yes	No	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42a9	3 of 9	Yes	No	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42c3	3 of 9	Yes	No	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or6at1	3 of 9	Yes	No	☑ ☑☐☐☐☐☐☐☑
Danio rerio	or42c1	3 of 9	Yes	No	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42a5	3 of 9	Yes	No	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42d1	3 of 9	Yes	Yes	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42a8	3 of 9	Yes	Yes	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42b1	3 of 9	Yes	No	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or109-6	3 of 9	Yes	Yes	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42c4	3 of 9	Yes	Yes	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42d2	3 of 9	Yes	Yes	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42c2	3 of 9	Yes	Yes	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42e2	3 of 9	Yes	No	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42d3	3 of 9	Yes	No	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42a2	3 of 9	Yes	Yes	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42a4	3 of 9	Yes	Yes	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42a7	3 of 9	Yes	Yes	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42a1	3 of 9	Yes	No	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42e1	3 of 9	Yes	Yes	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42c5	3 of 9	Yes	Yes	☑ ☐☑☐☐☐☐☐☑
Danio rerio	or42e3	3 of 9	Yes	No	☑ ☐☑☐☐☐☐☐☑
Caenorhabditis elegans	srsx-32	2 of 9	Yes	Yes	☐ ☐☑☐☐☐☐☐☑
Caenorhabditis elegans	srsx-28	2 of 9	Yes	Yes	☐ ☐☑☐☐☐☐☐☑
Caenorhabditis elegans	srsx-27	2 of 9	Yes	Yes	☐ ☐☑☐☐☐☐☐☑
Caenorhabditis elegans	srsx-35	2 of 9	Yes	Yes	☐ ☐☑☐☐☐☐☐☑
Caenorhabditis elegans	srsx-38	2 of 9	Yes	Yes	☐ ☐☑☐☐☐☐☐☑
Caenorhabditis elegans	srsx-26	2 of 9	Yes	Yes	☐ ☐☑☐☐☐☐☐☑
Caenorhabditis elegans	srsx-33	2 of 9	Yes	Yes	☐ ☐☑☐☐☐☐☐☑
Caenorhabditis elegans	srsx-36	2 of 9	Yes	Yes	☐ ☐☑☐☐☐☐☐☑
Caenorhabditis elegans	srsx-31	2 of 9	Yes	Yes	☐ ☐☑☐☐☐☐☐☑
Caenorhabditis elegans	srsx-37	2 of 9	Yes	Yes	☐ ☐☑☐☐☐☐☐☑

Links to orthology data in JBrowse by filter level: Stringent, Moderate, No filter, Best and Best Reverse

Paralogy

Gene symbol	Rank	Alignment Length (aa)	Similarity %	Identity %	Method Count	Method Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Or1j13	1	312	92	87	5 of 9	☑☐☑☐☑☐☑☑☐
Or1j16	2	312	92	86	5 of 9	☑☐☑☐☑☐☑☑☐
Or1j10	3	304	91	84	6 of 9	☑☐☑☑☑☐☑☑☐
Or1j12	4	312	91	79	6 of 9	☑☐☑☑☑☐☑☑☐
Or1j16b	5	307	90	82	6 of 9	☑☐☑☑☑☐☑☑☐
Or1j15	6	304	90	84	6 of 9	☑☐☑☑☑☐☑☑☐
Or1j15b	7	307	89	82	6 of 9	☑☐☑☑☑☐☑☑☐
Or1j14	8	312	91	83	5 of 9	☑☐☑☐☑☐☑☑☐
Or1j13b	9	312	90	81	5 of 9	☑☐☑☐☑☐☑☑☐
Or1j12b	10	311	90	76	6 of 9	☑☐☑☑☑☐☑☑☐
Or1j21	11	311	89	79	5 of 9	☑☐☑☐☑☐☑☑☐
Or1j22	12	307	87	81	5 of 9	☑☐☑☐☑☐☑☑☐
Or1j19	13	303	88	78	5 of 9	☑☐☑☐☑☐☑☑☐
Or1j20	14	310	85	74	5 of 9	☑☐☑☐☑☐☑☑☐
Or1j4	15	311	83	70	4 of 9	☑☐☑☐☐☐☑☑☐
Or1j1	16	309	81	66	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e1e	17	309	79	60	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e18	18	308	81	61	3 of 9	☐☐☑☐☐☐☑☑☐
Or1e33	19	309	77	57	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e28	20	311	76	57	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e1fl1	21	309	76	59	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e27b	22	308	77	57	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e27	23	311	76	56	4 of 9	☑☐☑☐☐☐☑☑☐
Olr1469	24	308	79	60	3 of 9	☐☐☑☐☐☐☑☑☐
Olr1505	25	308	79	59	3 of 9	☐☐☑☐☐☐☑☑☐
Or1e1c	26	307	79	60	3 of 9	☐☐☑☐☐☐☑☑☐
Or1e35b	27	311	76	56	4 of 9	☑☐☑☐☐☐☑☑☐
Or1j8b	28	310	73	59	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e31	29	308	76	56	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e32	30	312	75	56	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f21	31	309	75	56	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e16	32	308	79	59	3 of 9	☐☐☑☐☐☐☑☑☐
Or1e22	33	311	75	56	4 of 9	☑☐☑☐☐☐☑☑☐
Olr1471	34	311	76	59	3 of 9	☐☐☑☐☐☐☑☑☐
Or1f19	35	309	74	56	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f19e	36	312	74	55	4 of 9	☑☐☑☐☐☐☑☑☐
Or1s2	37	307	72	59	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f27	38	307	75	56	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f29	39	312	74	55	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f45	39	312	74	55	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e20b	40	311	73	55	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e25	41	308	78	56	3 of 9	☐☐☑☐☐☐☑☑☐
Or1ad8	42	307	74	56	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e16d	43	308	77	56	3 of 9	☐☐☑☐☐☐☑☑☐
Olr1500	44	311	76	56	3 of 9	☐☐☑☐☐☐☑☑☐
Or1f20b	45	312	72	54	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f28	46	307	73	55	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f33	47	307	74	55	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f26	48	308	72	56	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f31	49	307	74	54	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f19f	50	304	74	55	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f20e	51	312	72	53	4 of 9	☑☐☑☐☐☐☑☑☐
Or1ad6	52	311	71	55	4 of 9	☑☐☑☐☐☐☑☑☐
Or1e26b	52	311	72	54	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f32	53	312	72	54	4 of 9	☑☐☑☐☐☐☑☑☐
Olr1493	54	309	76	56	3 of 9	☐☐☑☐☐☐☑☑☐
Or1f20d	55	312	71	54	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f30	56	307	72	55	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f34	57	305	72	54	4 of 9	☑☐☑☐☐☐☑☑☐
Or1p1	58	311	71	52	4 of 9	☑☐☑☐☐☐☑☑☐
Or1aa2	59	308	72	52	4 of 9	☑☐☑☐☐☐☑☑☐
Or1af1	60	307	71	53	4 of 9	☑☐☑☐☐☐☑☑☐
Or1ad1	61	307	73	56	3 of 9	☐☐☑☐☐☐☑☑☐
Or1i2	62	315	70	51	4 of 9	☑☐☑☐☐☐☑☑☐
Or1n1b	63	305	71	53	4 of 9	☑☐☑☐☐☐☑☑☐
Or1n2	64	304	72	53	4 of 9	☑☐☑☐☐☐☑☑☐
Or1ak2	65	309	70	53	4 of 9	☑☐☑☐☐☐☑☑☐
Or1n1	66	309	70	52	4 of 9	☑☐☑☐☐☐☑☑☐
Or1f21c	67	309	72	55	3 of 9	☐☐☑☐☐☐☑☑☐
Or1f21b	67	309	72	55	3 of 9	☑☐☑☐☐☐☐☑☐
Or1ad5	68	298	72	54	4 of 9	☑☐☑☐☐☐☑☑☐
Or1p1e	69	311	69	51	4 of 9	☑☐☑☐☐☐☑☑☐
Or7h8	70	302	73	50	4 of 9	☑☐☑☐☐☐☑☑☐
Or1m1	71	309	70	54	3 of 9	☑☐☐☐☐☐☑☑☐
Or7h7	72	304	70	49	4 of 9	☑☐☑☐☐☐☑☑☐
Or7c19	73	311	65	50	4 of 9	☑☐☑☐☐☐☑☑☐
Or1l4b	74	303	72	52	3 of 9	☑☐☑☐☐☐☑☐☐
Or1a1	75	308	71	50	3 of 9	☑☐☑☐☐☐☑☐☐
Or1a1b	76	305	71	51	3 of 9	☑☐☑☐☐☐☑☐☐
Or1l4	77	307	71	50	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g24	78	311	69	50	3 of 9	☑☐☑☐☐☐☑☐☐
Or7e171d	79	299	73	51	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g35	80	309	69	50	3 of 9	☑☐☑☐☐☐☑☐☐
Or7e24	81	305	71	49	3 of 9	☑☐☑☐☐☐☑☐☐
Or1l8	82	309	71	53	2 of 9	☑☐☐☐☐☐☑☐☐
Or7e171b	83	299	72	51	3 of 9	☑☐☑☐☐☐☑☐☐
Or7a36	84	309	69	49	3 of 9	☑☐☑☐☐☐☑☐☐
Or7h7b	85	304	71	48	3 of 9	☑☐☐☐☐☐☑☑☐
Or7d12	86	304	68	50	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g33	87	301	70	50	3 of 9	☑☐☐☐☐☐☑☑☐
Or7g32	88	310	68	48	3 of 9	☑☐☑☐☐☐☑☐☐
Or7a35	89	308	67	50	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g26	90	300	70	50	3 of 9	☑☐☑☐☐☐☑☐☐
Or7d11	91	307	69	48	3 of 9	☑☐☑☐☐☐☑☐☐
Or7a41	92	306	66	51	3 of 9	☑☐☑☐☐☐☑☐☐
Or7d9	93	310	68	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7c70	94	307	68	48	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g41	95	305	68	49	3 of 9	☑☐☑☐☐☐☑☐☐
Or7e173d	96	305	70	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7d10	97	310	67	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or1q1	98	306	68	48	3 of 9	☑☐☑☐☐☐☑☐☐
Or1x2b	98	306	68	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g12	99	307	67	48	3 of 9	☑☐☑☐☐☐☑☐☐
Or7e171	100	294	71	49	3 of 9	☑☐☑☐☐☐☑☐☐
Or1d2	101	305	67	49	3 of 9	☑☐☑☐☐☐☑☐☐
Or1x2	102	306	68	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g25	103	305	68	48	3 of 9	☑☐☑☐☐☐☑☐☐
Or7d11c	104	307	66	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g18	104	307	66	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7e166	105	297	72	51	2 of 9	☑☐☐☐☐☐☑☐☐
Or7g31	106	309	66	46	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g23e	107	311	65	46	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g34b	108	307	66	46	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g17	109	305	65	48	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g21	110	307	65	46	3 of 9	☑☐☑☐☐☐☑☐☐
Or7a38b	111	300	67	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g30	112	303	66	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or1o2e	113	303	65	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7a38	114	300	67	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7e169	115	297	70	50	2 of 9	☑☐☐☐☐☐☑☐☐
Or7a44	116	309	63	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g34	117	303	66	46	3 of 9	☑☐☑☐☐☐☑☐☐
Or7a37	118	309	67	48	2 of 9	☐☐☑☐☐☐☑☐☐
Olr1143	119	303	65	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g29	120	310	63	46	3 of 9	☑☐☑☐☐☐☑☐☐
Or7e169c	121	298	70	48	2 of 9	☑☐☐☐☐☐☑☐☐
Or7a38c	122	296	67	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7e176	123	287	67	50	3 of 9	☑☐☑☐☐☐☑☐☐
Or12k7	124	301	70	47	2 of 9	☑☐☐☐☐☐☑☐☐
Or7g22	125	307	64	46	3 of 9	☑☐☑☐☐☐☑☐☐
Or7a38d	126	300	66	46	3 of 9	☑☐☑☐☐☐☑☐☐
Or7c74	127	287	67	50	3 of 9	☑☐☑☐☐☐☑☐☐
Or7g25c	128	305	64	45	3 of 9	☑☐☑☐☐☐☑☐☐
Or7e174	129	304	64	45	3 of 9	☑☐☑☐☐☐☑☐☐
Or7a39	130	312	66	46	2 of 9	☑☐☐☐☐☐☑☐☐
Or1x2d	131	309	66	45	2 of 9	☐☐☑☐☐☐☑☐☐
Or7e177	132	285	67	47	3 of 9	☑☐☑☐☐☐☑☐☐
Or7e173	133	304	68	44	2 of 9	☑☐☐☐☐☐☑☐☐
Or7a38e	134	304	66	46	2 of 9	☑☐☐☐☐☐☑☐☐
Or7g23	135	307	65	46	2 of 9	☑☐☐☐☐☐☑☐☐
Or7g16	136	315	65	43	2 of 9	☑☐☐☐☐☐☑☐☐
Or7g23c	137	307	64	46	2 of 9	☑☐☐☐☐☐☑☐☐
Or8s8	139	315	63	43	2 of 9	☑☐☐☐☐☐☑☐☐
Or7e176b	140	286	67	49	2 of 9	☐☐☑☐☐☐☑☐☐
Or8s10	141	315	61	43	2 of 9	☑☐☐☐☐☐☑☐☐
Or8s16	142	308	64	43	2 of 9	☑☐☐☐☐☐☑☐☐
Or8s2	143	303	65	44	2 of 9	☑☐☐☐☐☐☑☐☐
Or1o2	144	302	64	45	2 of 9	☑☐☐☐☐☐☑☐☐
Or7g23b	145	304	63	45	2 of 9	☑☐☐☐☐☐☑☐☐
Or1b1	146	307	64	42	2 of 9	☑☐☐☐☐☐☑☐☐
Or3a4	147	307	63	43	2 of 9	☑☐☐☐☐☐☑☐☐
Or7g89	148	294	65	45	2 of 9	☑☐☐☐☐☐☑☐☐
Or3a1e	149	304	64	41	2 of 9	☑☐☐☐☐☐☑☐☐
Or8s5	150	303	62	43	2 of 9	☑☐☐☐☐☐☑☐☐
Or3a1f	151	304	62	41	2 of 9	☑☐☐☐☐☐☑☐☐
Or11m3	152	311	56	35	2 of 9	☑☐☐☐☐☐☑☐☐
Olr1571	153				2 of 9	☐☐☑☐☐☐☑☐☐

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources

RGD

Other Sources

None

Phenotype Term

Annotation details

References

taste/olfaction phenotype

View

PMID:15057822

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Disease Associations

Must provide at least one subject

Cell color indicative of annotation volume

Species	Gene	Association	Disease Qualifier	Disease	Evidence	Source	Based On	References
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Alleles and Variants

Genome location

Chr3:20315162...20316100 + (0.94 kb)

Assembly version

mRatBN7.2

Viewer Help

Data currently unavailable; sequence viewer under construction

Allele/Variant Symbol	Category	Variant
NC_051338.1:g.20315893T>C	variant	rs106064346 SNP synonymous variant
NC_051338.1:g.20315220G>A	variant	rs3319821544 SNP missense variant
NC_051338.1:g.20315585G>A	variant	rs106676014 SNP missense variant

Showing 1 - 3 of 3 rows

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1

View detailed Alleles/Variants information

Download all Alleles/Variants for all genes of the species

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location

Chr3:20315162...20316100 + (0.94 kb)

Assembly version

mRatBN7.2

Viewer Help

Data currently unavailable; sequence viewer under construction

Sequence Details

Transcript: Mode:

Expression

Primary Sources

None

Other Sources

Must provide at least one subject

Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available