Version: 8.0.0
Date: Tue Jan 28 2025
RGD1359108
Rattus norvegicusRGD:1359108
SummaryOrthologyParalogyFunction - GO AnnotationsPathwaysPhenotypesDisease AssociationsAlleles and VariantsTransgenic AllelesModelsSequence Feature ViewerSequence DetailsExpressionMolecular InteractionsGenetic Interactions
Gene

RGD1359108

Species
Rattus norvegicus
Symbol
RGD1359108
Name
similar to RIKEN cDNA 3110043O21
Synonyms
  • C9orf72
  • guanine nucleotide exchange C9orf72 homolog
Biotype
protein coding gene
Automated Description
Predicted to enable GTPase activator activity and small GTPase binding activity. Predicted to contribute to guanyl-nucleotide exchange factor activity. Predicted to be involved in several processes, including axon extension; regulation of organelle organization; and stress granule assembly. Predicted to be located in several cellular components, including Flemming body; axon; and cytoplasmic ribonucleoprotein granule. Predicted to be part of Atg1/ULK1 kinase complex and guanyl-nucleotide exchange factor complex. Predicted to be active in several cellular components, including autophagosome; hippocampal mossy fiber to CA3 synapse; and presynaptic cytosol. Human ortholog(s) of this gene implicated in frontotemporal dementia and/or amyotrophic lateral sclerosis 1. Orthologous to human C9orf72 (C9orf72-SMCR8 complex subunit).
RGD Description
Predicted to enable GTPase activator activity and small GTPase binding activity. Predicted to contribute to guanyl-nucleotide exchange factor activity. Predicted to be involved in several processes, including axon extension; regulation of organelle organization; and stress granule assembly. Predicted to be located in several cellular components, including Flemming body; axon; and cytoplasmic ribonucleoprotein granule. Predicted to be part of Atg1/ULK1 kinase complex and guanyl-nucleotide exchange factor complex. Predicted to be active in several cellular components, including autophagosome; hippocampal mossy fiber to CA3 synapse; and presynaptic cytosol. Human ortholog(s) of this gene implicated in frontotemporal dementia and/or amyotrophic lateral sclerosis 1. Orthologous to human C9orf72 (C9orf72-SMCR8 complex subunit); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR31855
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
Phenotype Term
Annotation details
References
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    Disease Associations

    Cases where the expected disease association was NOT found
    Cell color indicative of annotation volume
    No data available

    Alleles and Variants

    Allele/Variant Symbol
    Allele Synonyms
    Category
    Variant
    Variant type
    Molecular consequence
    Has Disease Annotations
    Has Phenotype Annotations
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      Transgenic Alleles

      Species
      (carrying the transgene)
      Allele symbol
      Transgenic construct
      Expressed components
      Knock-down targets
      Regulatory regions
      Has Disease Annotations
      Has Phenotype Annotations
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        Models

        Model name
        Experimental condition
        Associated Human Diseases
        Associated Phenotypes
        Modifier
        Source
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          Sequence Feature Viewer

          Genome location
          Assembly version
          mRatBN7.2
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          Data currently unavailable; sequence viewer under construction

          Sequence Details

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          Expression

          Primary Sources
          None
          Other Sources
          Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

          Molecular Interactions

          RGD1359108 molecule type
          Interactor gene
          Interactor species
          Interactor molecule type
          Detection methods
          Source
          Reference
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            Genetic Interactions

            RGD1359108 role
            RGD1359108 genetic perturbation
            Interactor gene
            Interactor species
            Interactor role
            Interactor genetic perturbation
            Interaction type
            Phenotype or trait
            Source
            Reference
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