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Date: Wed Oct 09 2024
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RT1-M10-1
Rattus norvegicus
RGD:1359635
Summary
Orthology
Paralogy
Function - GO Annotations
Pathways
Phenotypes
Disease Associations
Alleles and Variants
Transgenic Alleles
Models
Sequence Feature Viewer
Sequence Details
Expression
Molecular Interactions
Genetic Interactions
Gene
RT1-M10-1
Species
Rattus norvegicus
Symbol
RT1-M10-1
Name
RT1 class I, locus M10, gene 1
Synonyms
H2-M10.6
histocompatibility 2, M region locus 10.6
Show All 3
Biotype
ncRNA gene
Automated Description
Predicted to be located in membrane.
RGD Description
Predicted to be located in membrane; PARTICIPATES IN allograft rejection pathway; antigen processing and presentation pathway; autoimmune thyroiditis pathway; INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; acrylamide; cadmium dichloride.
Cross References
ENSEMBL:ENSRNOG00000062809
NCBI_Gene:414787
Show All 3
Additional Information
Literature
Orthology
Gene tree
PANTHER:PTHR16675
Stringency:
Stringent
Moderate
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Additional filters to further constrain the results:
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Species:
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Methods:
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Links to orthology data in JBrowse by filter level:
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Paralogy
No paralogs for the gene.
Function - GO Annotations
Compare ortholog genes
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Species
All vertebrates
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Homo sapiens
Mus musculus
Xenopus laevis
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Drosophila melanogaster
Caenorhabditis elegans
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Show functions with at least one experimental evidence
Pathways
Reactome Pathway (0)
Reactome Reactions (0)
GO-CAMs (0)
No data available
No data available
No data available
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GO-CAM Data Model
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Phenotypes
Primary Sources
None
Other Sources
None
No data available
Disease Associations
Compare ortholog genes
Stringency: Stringent
Stringent
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Species
All vertebrates
All invertebrates
Homo sapiens
Mus musculus
Xenopus laevis
Xenopus tropicalis
Danio rerio
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae
Clear
Include negative annotations
Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
Alleles and Variants
Download all Alleles/Variants for all genes of the species
Transgenic Alleles
No data available
Models
No data available
Sequence Feature Viewer
Genome location
Chr20:1986788...2020117
+ (33.33 kb)
Assembly version
mRatBN7.2
Viewer Help
1.990M
1.995M
2.000M
2.005M
2.010M
2.015M
2.020M
Sequence Details
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Expression
Primary Sources
None
Other Sources
GEO
Single Cell Expression Atlas
Compare ortholog genes
Stringency: Stringent
Stringent
Moderate
No filter
Clear
Species
All vertebrates
All invertebrates
Homo sapiens
Mus musculus
Xenopus laevis
Xenopus tropicalis
Danio rerio
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae
Clear
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.
Molecular Interactions
No data available
Genetic Interactions
No data available
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