Gene

Vom1r71

Species
Rattus norvegicus
Symbol
Vom1r71
Name
vomeronasal 1 receptor 71
Synonyms
  • V1rc5
  • vomernasal 1 receptor Vom1r71
Biotype
protein coding gene
Automated Description
Predicted to enable pheromone receptor activity. Predicted to be involved in several processes, including hematopoietic progenitor cell differentiation; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Orthologous to human VN1R5 (vomeronasal 1 receptor 5 (gene/pseudogene)).
RGD Description
Predicted to enable pheromone receptor activity. Predicted to be involved in several processes, including hematopoietic progenitor cell differentiation; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Orthologous to human VN1R5 (vomeronasal 1 receptor 5 (gene/pseudogene)); INTERACTS WITH cadmium dichloride; trichloroethene.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR24062
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensVN1R53 of 10YesYes  
Mus musculusVmn1r139 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Vom1r70130087786 of 9 
Vom1r89230085756 of 9 
Vom1r66330085736 of 9 
Vom1r69330085736 of 9 
Vom1r74430085736 of 9 
Vom1r86529885736 of 9 
Vom1r82629883736 of 9 
Vom1r87629884736 of 9 
Vom1r84730083726 of 9 
Vom1r75730083726 of 9 
Vom1r67830083716 of 9 
Vom1r80930083706 of 9 
Vom1r881029883716 of 9 
Vom1r731130083706 of 9 
Vom1r811130082716 of 9 
Vom1r761230083696 of 9 
Vom1r781329883716 of 9 
Vom1r651429887715 of 9 
Vom1r831529984686 of 9 
Vom1r681629883706 of 9 
Vom1r721730082696 of 9 
Vom1r771830082686 of 9 
Vom1r851930081696 of 9 
Vom1r792027983706 of 9 
Vom1r942130065404 of 9 
Vom1r902229264414 of 9 
Vom1r1002330066403 of 9 
Vom1r1032430064393 of 9 
Vom1r1022529663393 of 9 
Vom1r982629860344 of 9 
Vom1r952729460344 of 9 
Vom1r962829856324 of 9 
Vom1r1122930852344 of 9 
Vom1r1013029656314 of 9 
Vom1r923130456323 of 9 
Vom1r583231650343 of 9 
Vom1r593331750333 of 9 
Vom1r933430455333 of 9 
Vom1r233529351334 of 9 
Vom1r973629856313 of 9 
Vom1r473729851363 of 9 
Vom1r403830950333 of 9 
Vom1r413930351343 of 9 
Vom1r444031748323 of 9 
Vom1r614130651323 of 9 
Vom1r1074230351333 of 9 
Vom1r464328853343 of 9 
Vom1r504429053333 of 9 
Vom1r454532047313 of 9 
Vom1r434631148323 of 9 
Vom1r114728054343 of 9 
Vom1r604831750332 of 9 
Vom1r994923361374 of 9 
Vom1r1085031647313 of 9 
Vom1r625129052323 of 9 
Vom1r215228653323 of 9 
Vom1r555329451313 of 9 
Vom1r305430547313 of 9 
Vom1r75528651313 of 9 
Vom1r575627752343 of 9 
Vom1r225728452313 of 9 
Vom1r635829647313 of 9 
Vom1r535930047283 of 9 
Vom1r66028549313 of 9 
Vom1r316129048303 of 9 
Vom1r1066228546274 of 9 
Vom1r26328646313 of 9 
Vom1r36428248313 of 9 
Vom1r126527850303 of 9 
Vom1r96628751322 of 9 
Vom1r86729250302 of 9 
Vom1r46828247303 of 9 
Vom1r16929848302 of 9 
Vom1r107027350283 of 9 
Vom1r327130548282 of 9 
Vom1r517229446273 of 9 
Vom1r1107327149303 of 9 
Vom1r157428648273 of 9 
Vom1r297627149303 of 9 
Vom1r277726950283 of 9 
Vom1r207829146263 of 9 
LOC1009111847925550323 of 9 
Vom1r248028046283 of 9 
Vom1r358130048262 of 9 
Vom1r388230246272 of 9 
Vom1r378329346262 of 9 
Vom1r368429346252 of 9 
Vom1r-ps51862 of 9 

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
all annotationsall disease by infectious agentbacterial infectious diseasefungal infectious diseaseparasitic infectious diseaseviral infectious diseaseall disease of anatomical entitycardiovascular system diseasecentral nervous system diseaseendocrine system diseasegastrointestinal system diseasehematopoietic system diseaseimmune system diseaseintegumentary system diseasemusculoskeletal system diseaseperipheral nervous system diseasereproductive system diseaserespiratory system diseasesensory system diseasethoracic diseaseurinary system diseaseall disease of cellular proliferationbenign neoplasmcancerpre-malignant neoplasmall genetic diseasechromosomal diseasemonogenic diseasepolygenic diseaseall other diseasedisease of mental healthdisease of metabolismphysical disordersyndrome
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
86.5369M86.5370M86.5371M86.5372M86.5373M86.5374M86.5375M86.5376M86.5377M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051339.1:g.86537576A>Gvariant
SNP
  • missense variant
NC_051339.1:g.86537491C>Tvariant
SNP
  • synonymous variant
NC_051339.1:g.86537290G>Tvariant
SNP
  • synonymous variant
NC_051339.1:g.86537489C>Tvariant
SNP
  • missense variant
NC_051339.1:g.86537612C>Tvariant
SNP
  • missense variant
NC_051339.1:g.86537383A>Gvariant
SNP
  • synonymous variant
Showing 1 - 6 of 6 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
86.5369M86.5370M86.5371M86.5372M86.5373M86.5374M86.5375M86.5376M86.5377MENSRNOT00000058702.4 (Vom1r71)NM_001009523.1 (Vom1r71)

Sequence Details

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Expression

Primary Sources
None
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available